The Hoosier cavefish, a new and endangered species (Amblyopsidae, Amblyopsis) from the caves of southern Indiana

doi:10.3897/zookeys.412.7245

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Title	The Hoosier cavefish, a new and endangered species (Amblyopsidae, Amblyopsis) from the caves of southern Indiana
Author(s)	Prosanta Chakrabarty Jacques Prejean Matthew Niemiller
Journal	ZooKeys
ISSN	1313-2989
Volume	412
Pages	41--57
DOI	10.3897/zookeys.412.7245
Year	2014
Publisher	Pensoft Publishers
Citation

...

Recent researches of Prof. Agassiz.
by L Agassiz
American Journal of Science and Arts 16 pages 134--136 (1853)
Status and phylogeny of Milyeringidae, with the description of a new blind cave fish from Australia, Milyeringa brooksi, n. sp.
by P Chakrabarty
Zootaxa 2557 pages 19--28 (2010)
First reported case of a trans-oceanic sister-group relationship between vertebrate troglobites.
by P Chakrabarty;MP Davis;JS Sparks
PLoS ONE 7 (2012)
GenSeq: An updated nomenclature for genetic sequences and a formal ranking of sequences from type and non-type sources.
by P Chakrabarty;M Warren;L Page;C Baldwin
ZooKeys 346 pages 29--41 (2013)
The optic tectum and its related fiber tracts in blind fishes. A. Troglichthys rosae and Typhlichthys eigenmanni.
by HH Charlton
Journal of Comparative Neurology 57 pages 285--325 (1933)
Zoology of New-York, or the New-York fauna; comprising detailed descriptions of all the animals hitherto observed within the state of New-York, with brief notices of those occasionally found near its borders, and accompanied by appropriate illustrations. Part IV. Fishes
by JE DeKay
On the Amblyopsidae
by CH Eigenmann
Science 7 (1898)
The eyes of the blind vertebrates of North America. I. The eyes of the Amblyopsidae.
by CH Eigenmann
Development Genes and Evolution 8 pages 545--617 (1899)
Mark Anniversay Volume
by CH Eigenmann
Divergence and convergence in fishes.
by CH Eigenmann
Biological Bulletin 8 pages 59--66 (1905)
Cave Vertebrates of America: A Study in Degenerative Evolution
by CH Eigenmann
The blind cave fishes and their allies.
by SA Forbes
American Naturalist 16 pages 1--5 (1882)
IUCN 2013. IUCN Red List of Threatened Species
by M Gimenez Dixon
Ichthyological notices.
by CF Girard
Proceedings of the Academy of Natural Sciences of Philadelphia 11 pages 56--68 (1859)
revised by Smith GR.
by CL Hubbs;KF Lagler
Distribution of northern cavefish, Amblyopsis spelaea DeKay, in Indiana and Kentucky and recommendations for its protection.
by JH Keith
Natural Areas Journal 8 pages 69--79 (1988)
Cave Research Foundation 1979 Annual Report
by JH Keith;TL Poulson
The subterranean fauna of the Blue River area.
by JJ Lewis
Conservation assessment for the northern cavefish (Amblyopsis spelaea)
by JJ Lewis
Conservation assessment for the southern cavefish (Typhlichthys subterraneus).
by JJ Lewis
Age, growth and fin erosion of the northern cavefish Amblyopsis spelaea in Kentucky and Indiana.
by MM Lovis
Field surveys and use of a spatially realistic stochastic patch occupancy model to evaluate the conservation status of the northern cavefish, Amblyopsis spelaea DeKay
by JR McCandless
NatureServe Explorer: An online encyclopedia of life
by NatureServe
Evidence for repeated loss of selective constraint in rhodopsin of amblyopsid cavefishes (Teleostei: Amblyopsidae).
by ML Niemiller;BM Fitzpatrick;P Shah;L Schmitz;TJ Near
Evolution 67 pages 732--748 (2013a)
Doomed before they are described? The need for conservation assessments of cryptic species complexes using an amblyopsid cavefish (Amblyopsidae: Typhlichthys) as a case study.
by ML Niemiller;GO Graening;DB Fenolio;JC Godwin;JR Cooley;WR Pearson;TJ Near;BM Fitzpatrick
Biodiversity and Conservation 22 pages 1799--1820 (2013b)
Evidence for hearing loss in amblyopsid cavefishes.
by ML Niemiller;DM Higgs;D Soares
Biology Letters 9 (2013c)
Effects of climatic and geological processes during the Pleistocene on the evolutionary history of the northern cavefish, Amblyopsis spelaea (Teleostei: Amblyopsidae).
by ML Niemiller;JR McCandless;RG Reynolds;J Caddle;CR Tillquist;TJ Near;WD Pearson;BM Fitzpatrick
Evolution 67 pages 1011--1025 (2013d)
Delimiting species using multilocus data: diagnosing cryptic diversity in the southern cavefish Typhlichthys subterraneus (Teleostei: Amblyopsidae).
by ML Niemiller;TJ Near;BM Fitzpatrick
Evolution 66 pages 846--866 (2012)
The Biology of Subterranean Fishes
by ML Niemiller;TL Poulson
The reaction of the blind fish, Amblyopsis spelaeus, to light.
by F Payne
Biological Bulletin 13 pages 317--323 (1907)
Technical report. Nongame and Endangered Wildlife Program
by WD Pearson;CH Boston
Cave adaptation in amblyopsid cavefishes
by TL Poulson
Cave adaptation in amblyopsid fishes.
by TL Poulson
American Midland Naturalist 70 pages 257--290 (1963)
The blind fishes of the Mammoth Cave and their allies.
by FW Putnam
American Naturalist 6 pages 6--30 (1872)
The optic lobes and optic tracts of Amblyopsis spelaeus DeKay.
by EE Ramsey
Journal of Comparative Neurology 11 pages 40--47 (1901)
R: A language and environment for statistical computing
by R Development Core Team
Comments on the relationships of the North American cave fishes of the family Amblyopsidae.
by DE Rosen
American Museum Novitates 2109 pages 1--35 (1962)
Revision of the endemic Malagasy cavefish genus Typhleotris (Teleostei: Gobiiformes: Milyeringidae), with a discussion of its phylogenetic placement and the description of a new species.
by JS Sparks;P Chakrabarty
American Museum Novitates 3764 pages 1--28 (2012)
- 10.1206/3764.2
Revised procedures for staining and clearing small fishes and other vertebrates for bone and cartilage study.
by WR Taylor;GC Van Dyke
Cybium 9 pages 107--119 (1985)
The cave, spring, and swamp fishes of the family Amblyopsidae of central and eastern United States.
by LP Woods;RF Inger
American Midland Naturalist 58 pages 232--256 (1957)

Only known citations between publications in BioNames are listed here.

[1] Recent researches of Prof. Agassiz.
by L Agassiz
American Journal of Science and Arts 16 pages 134--136 (1853)

[2] Status and phylogeny of Milyeringidae, with the description of a new blind cave fish from Australia, Milyeringa brooksi, n. sp.
by P Chakrabarty
Zootaxa 2557 pages 19--28 (2010)

[3] First reported case of a trans-oceanic sister-group relationship between vertebrate troglobites.
by P Chakrabarty;MP Davis;JS Sparks
PLoS ONE 7 (2012)

[4] GenSeq: An updated nomenclature for genetic sequences and a formal ranking of sequences from type and non-type sources.
by P Chakrabarty;M Warren;L Page;C Baldwin
ZooKeys 346 pages 29--41 (2013)

[5] The optic tectum and its related fiber tracts in blind fishes. A. Troglichthys rosae and Typhlichthys eigenmanni.
by HH Charlton
Journal of Comparative Neurology 57 pages 285--325 (1933)

[6] Zoology of New-York, or the New-York fauna; comprising detailed descriptions of all the animals hitherto observed within the state of New-York, with brief notices of those occasionally found near its borders, and accompanied by appropriate illustrations. Part IV. Fishes
by JE DeKay

[7] On the Amblyopsidae
by CH Eigenmann
Science 7 (1898)

[8] The eyes of the blind vertebrates of North America. I. The eyes of the Amblyopsidae.
by CH Eigenmann
Development Genes and Evolution 8 pages 545--617 (1899)

[9] Mark Anniversay Volume
by CH Eigenmann

[10] Divergence and convergence in fishes.
by CH Eigenmann
Biological Bulletin 8 pages 59--66 (1905)

[11] Cave Vertebrates of America: A Study in Degenerative Evolution
by CH Eigenmann

[12] The blind cave fishes and their allies.
by SA Forbes
American Naturalist 16 pages 1--5 (1882)

[13] IUCN 2013. IUCN Red List of Threatened Species
by M Gimenez Dixon

[14] Ichthyological notices.
by CF Girard
Proceedings of the Academy of Natural Sciences of Philadelphia 11 pages 56--68 (1859)

[15] revised by Smith GR.
by CL Hubbs;KF Lagler

[16] Distribution of northern cavefish, Amblyopsis spelaea DeKay, in Indiana and Kentucky and recommendations for its protection.
by JH Keith
Natural Areas Journal 8 pages 69--79 (1988)

[17] Cave Research Foundation 1979 Annual Report
by JH Keith;TL Poulson

[18] The subterranean fauna of the Blue River area.
by JJ Lewis

[19] Conservation assessment for the northern cavefish (Amblyopsis spelaea)
by JJ Lewis

[20] Conservation assessment for the southern cavefish (Typhlichthys subterraneus).
by JJ Lewis

[21] Age, growth and fin erosion of the northern cavefish Amblyopsis spelaea in Kentucky and Indiana.
by MM Lovis

[22] Field surveys and use of a spatially realistic stochastic patch occupancy model to evaluate the conservation status of the northern cavefish, Amblyopsis spelaea DeKay
by JR McCandless

[23] NatureServe Explorer: An online encyclopedia of life
by NatureServe

[24] Evidence for repeated loss of selective constraint in rhodopsin of amblyopsid cavefishes (Teleostei: Amblyopsidae).
by ML Niemiller;BM Fitzpatrick;P Shah;L Schmitz;TJ Near
Evolution 67 pages 732--748 (2013a)

[25] Doomed before they are described? The need for conservation assessments of cryptic species complexes using an amblyopsid cavefish (Amblyopsidae: Typhlichthys) as a case study.
by ML Niemiller;GO Graening;DB Fenolio;JC Godwin;JR Cooley;WR Pearson;TJ Near;BM Fitzpatrick
Biodiversity and Conservation 22 pages 1799--1820 (2013b)

[26] Evidence for hearing loss in amblyopsid cavefishes.
by ML Niemiller;DM Higgs;D Soares
Biology Letters 9 (2013c)

[27] Effects of climatic and geological processes during the Pleistocene on the evolutionary history of the northern cavefish, Amblyopsis spelaea (Teleostei: Amblyopsidae).
by ML Niemiller;JR McCandless;RG Reynolds;J Caddle;CR Tillquist;TJ Near;WD Pearson;BM Fitzpatrick
Evolution 67 pages 1011--1025 (2013d)

[28] Delimiting species using multilocus data: diagnosing cryptic diversity in the southern cavefish Typhlichthys subterraneus (Teleostei: Amblyopsidae).
by ML Niemiller;TJ Near;BM Fitzpatrick
Evolution 66 pages 846--866 (2012)

[29] The Biology of Subterranean Fishes
by ML Niemiller;TL Poulson

[30] The reaction of the blind fish, Amblyopsis spelaeus, to light.
by F Payne
Biological Bulletin 13 pages 317--323 (1907)

[31] Technical report. Nongame and Endangered Wildlife Program
by WD Pearson;CH Boston

[32] Cave adaptation in amblyopsid cavefishes
by TL Poulson

[33] Cave adaptation in amblyopsid fishes.
by TL Poulson
American Midland Naturalist 70 pages 257--290 (1963)

[34] The blind fishes of the Mammoth Cave and their allies.
by FW Putnam
American Naturalist 6 pages 6--30 (1872)

[35] The optic lobes and optic tracts of Amblyopsis spelaeus DeKay.
by EE Ramsey
Journal of Comparative Neurology 11 pages 40--47 (1901)

[36] R: A language and environment for statistical computing
by R Development Core Team

[37] Comments on the relationships of the North American cave fishes of the family Amblyopsidae.
by DE Rosen
American Museum Novitates 2109 pages 1--35 (1962)

[38] Revision of the endemic Malagasy cavefish genus Typhleotris (Teleostei: Gobiiformes: Milyeringidae), with a discussion of its phylogenetic placement and the description of a new species.
by JS Sparks;P Chakrabarty
American Museum Novitates 3764 pages 1--28 (2012)
10.1206/3764.2

[39] 10.1206/3764.2

[40] Revised procedures for staining and clearing small fishes and other vertebrates for bone and cartilage study.
by WR Taylor;GC Van Dyke
Cybium 9 pages 107--119 (1985)

[41] The cave, spring, and swamp fishes of the family Amblyopsidae of central and eastern United States.
by LP Woods;RF Inger
American Midland Naturalist 58 pages 232--256 (1957)

Recent researches of Prof. Agassiz.

Status and phylogeny of Milyeringidae, with the description of a new blind cave fish from Australia, Milyeringa brooksi, n. sp.

First reported case of a trans-oceanic sister-group relationship between vertebrate troglobites.

GenSeq: An updated nomenclature for genetic sequences and a formal ranking of sequences from type and non-type sources.

The optic tectum and its related fiber tracts in blind fishes. A. Troglichthys rosae and Typhlichthys eigenmanni.

Zoology of New-York, or the New-York fauna; comprising detailed descriptions of all the animals hitherto observed within the state of New-York, with brief notices of those occasionally found near its borders, and accompanied by appropriate illustrations. Part IV. Fishes

On the Amblyopsidae

The eyes of the blind vertebrates of North America. I. The eyes of the Amblyopsidae.

Mark Anniversay Volume

Divergence and convergence in fishes.

Cave Vertebrates of America: A Study in Degenerative Evolution

The blind cave fishes and their allies.

IUCN 2013. IUCN Red List of Threatened Species

Ichthyological notices.

revised by Smith GR.

Distribution of northern cavefish, Amblyopsis spelaea DeKay, in Indiana and Kentucky and recommendations for its protection.

Cave Research Foundation 1979 Annual Report

The subterranean fauna of the Blue River area.

Conservation assessment for the northern cavefish (Amblyopsis spelaea)

Conservation assessment for the southern cavefish (Typhlichthys subterraneus).

Age, growth and fin erosion of the northern cavefish Amblyopsis spelaea in Kentucky and Indiana.

Field surveys and use of a spatially realistic stochastic patch occupancy model to evaluate the conservation status of the northern cavefish, Amblyopsis spelaea DeKay

NatureServe Explorer: An online encyclopedia of life

Evidence for repeated loss of selective constraint in rhodopsin of amblyopsid cavefishes (Teleostei: Amblyopsidae).

Doomed before they are described? The need for conservation assessments of cryptic species complexes using an amblyopsid cavefish (Amblyopsidae: Typhlichthys) as a case study.

Evidence for hearing loss in amblyopsid cavefishes.

Effects of climatic and geological processes during the Pleistocene on the evolutionary history of the northern cavefish, Amblyopsis spelaea (Teleostei: Amblyopsidae).

Delimiting species using multilocus data: diagnosing cryptic diversity in the southern cavefish Typhlichthys subterraneus (Teleostei: Amblyopsidae).

The Biology of Subterranean Fishes

The reaction of the blind fish, Amblyopsis spelaeus, to light.

Technical report. Nongame and Endangered Wildlife Program

Cave adaptation in amblyopsid cavefishes

Cave adaptation in amblyopsid fishes.

The blind fishes of the Mammoth Cave and their allies.

The optic lobes and optic tracts of Amblyopsis spelaeus DeKay.

R: A language and environment for statistical computing

Comments on the relationships of the North American cave fishes of the family Amblyopsidae.

Revision of the endemic Malagasy cavefish genus Typhleotris (Teleostei: Gobiiformes: Milyeringidae), with a discussion of its phylogenetic placement and the description of a new species.

Revised procedures for staining and clearing small fishes and other vertebrates for bone and cartilage study.

The cave, spring, and swamp fishes of the family Amblyopsidae of central and eastern United States.

The Hoosier cavefish, a new and endangered species (Amblyopsidae, Amblyopsis) from the caves of southern Indiana

Authors