Molecular phylogenetic evidence supports a new family of octocorals and a new genus of Alcyoniidae (Octocorallia, Alcyonacea)

doi:10.3897/zookeys.346.6270

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Title	Molecular phylogenetic evidence supports a new family of octocorals and a new genus of Alcyoniidae (Octocorallia, Alcyonacea)
Journal	ZooKeys
ISSN	1313-2989
Volume	346
Pages	59--83
DOI	10.3897/zookeys.346.6270
Year	2013
Citation

...

Four new genera of soft corals (Coelenterata: Octocorallia), with notes on the classification of some established taxa.
by P Alderslade
Zoologische Mededelingen Leiden 74 pages 237--249 (2000)
Key to the genera of Octocorallia exclusive of Pennatulacea (Coelenterata: Anthozoa), with diagnoses of new taxa.
by FM Bayer
Proceedings of the Biological Society of Washington 94 pages 878--901 (1981)
- 81630
Taxonomic status of the octocoral genus Bathyalcyon (Alcyoniidae: Anthomastinae), with descriptions of a new subspecies from the Gulf of Mexico and a new species of Anthomastus from Antarctic waters.
by FM Bayer
Precious Corals & Octocoral Research 1 pages 3--13 (1993)
Corals of the south-west Indian Ocean II. Eleutherobiaaurea spec. nov. (Cnidaria, Alcyonacea) from deep reefs on the KwaZulu-Natal coast, South Africa.
by Y Benayahu;M Schleyer
Oceanographic Research Instititute Investigational Reports 68 pages 1--12 (1995)
Phylogenetic relationships within the Octocorallia (Cnidaria: Anthozoa) based on nuclear 18S rRNA sequences.
by EA Berntson;FM Bayer;AG McArthur;SC France
Marine Biology 138 pages 235--246 (2001)
- 10.1007/s002270000457
A quarter-century of deep-sea malacological exploration in the South and West Paciﬁc: Where do we stand? How far to go?
by P Bouchet;V Héros;P Lozouet;P Maestrati
Tropical Deep-Sea Benthos 25 196 pages 9--40 (2008)
The mitochondrial genome of Paraminabea aldersladei (Cnidaria: Anthozoa: Octocorallia) supports intramolecular recombination as the primary mechanism of gene rearrangement in octocoral mitochondrial genomes.
by SA Brockman;CS McFadden
Genome Biology and Evolution 4 pages 882--894 (2012)
- 10.1093/gbe/evs074
The phylum Cnidaria: A review of phylogenetic patterns and diversity 300 years after Linnaeus.
by M Daly;MR Brugler;P Cartwright;AG Collins;MN Dawson;DG Fautin;SC France;CS McFadden;DM Opresko;E Rodriguez;S Romano;J Stake
Zootaxa 1668 pages 1--766 (2007)
New data on soft corals (Cnidaria: Octocorallia: Alcyonacea) from Nha Trang Bay, South China Sea.
by TN Dautova;OV Savinkin
Zootaxa 2027 pages 1--27 (2009)
by K Fabricius;P Alderslade
Alcyoniid octocorals from Suruga Bay, the Pacific coast of central Japan.
by Y Imahara
Annotationes Zoologicae Japonenses 50 pages 31--35 (1977)
- 110003353177
MAFFT version 5: improvement in accuracy of multiple sequence alignment.
by K Katoh;K Kuma;H Toh;T Miyata
Nucleic Acids Research 33 pages 511--513 (2005)
- 10.1093/nar/gki198
Stoloniferous octocorals (Anthozoa, Octocorallia) from South Africa, with descriptions of a new family of Alcyonacea, a new genus of Clavulariidae, and a new species of Cornularia (Cornulariidae).
by CS McFadden;LP van Ofwegen
Invertebrate Systematics 26 pages 331--356 (2012)
- 10.1071/IS12035
A second, cryptic species of the soft coral genus Incrustatus (Anthozoa: Octocorallia: Clavulariidae) from Tierra del Fuego, Argentina, revealed by DNA barcoding.
by CS McFadden;LP van Ofwegen
Helgoland Marine Research 67 pages 137--147 (2013)
- 10.1007/s10152-012-0310-7
A molecular phylogenetic analysis of reproductive trait evolution in the soft coral genus Alcyonium.
by CS McFadden;RM Donahue;BK Hadland;R Weston
Evolution 55 pages 29--42 (2001)
- 10.1093/icb/icq056
A molecular phylogenetic analysis of the Octocorallia (Coelenterata: Anthozoa) based on mitochondrial protein-coding sequences.
by CS McFadden;SC France;JA Sánchez;P Alderslade
Molecular Phylogenetics and Evolution 41 pages 513--527 (2006)
- 10.1016/j.ympev.2006.06.010
Molecular phylogenetic insights into the evolution of Octocorallia: a review.
by CS McFadden;JA Sánchez;SC France
Integrative and Comparative Biology 50 pages 389--410 (2010)
Limitations of mitochondrial gene barcoding in the cnidarian sub-class Octocorallia.
by CS McFadden;Y Benayahu;E Pante;JN Thoma;PA Nevarez;SC France
Molecular Ecology Resources 11 pages 19--31 (2011)
- 10.1111/j.1755-0998.2010.02875.x
The genus Alcyonium (Octocorallia: Alcyonacea: Alcyoniidae) in Chile.
by LP van Ofwegen;V Häussermann;G Försterra
Zootaxa 1607 pages 1--19 (2007)
Modeltest: testing the model of DNA substitution.
by D Posada;KA Crandall
Bioinformatics 14 pages 817--818 (1998)
- 10.1093/bioinformatics/14.9.817
MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space.
by F Ronquist;M Teslenko;P van der Mark;D Ayres;A Darling;S Höhna;B Larget;L Liu;MA Suchard;JP Huelsenbeck
Systematic Biology 61 pages 539--542 (2012)
- 10.1093/sysbio/sys029
The Alcyonacea of the Siboga Expedition with an addendum to the Gorgonacea.
by JA Thomson;LMI Dean
Siboga Expedition Monograph 13d pages 1--227 (1931)
The Alcyonaria of the Cape of Good Hope and Natal. Alcyonacea.
by JS Thomson
Transactions of the Royal Society of Edinburgh XLVII pages 549--589 (1910)
- 10.1017/s0080456800005032
The alcyonarian genus Bellonella from Japan, with descriptions of two new species.
by H Utinomi
Publications of the Seto Marine Biological Laboratory 6 pages 147--168 (1957)
- 2433/174581
Revision of the genera Bellonella, Eleutherobia, Nidalia and Nidaliopsis (Octocorallia: Alcyoniidae and Nidaliidae), with descriptions of two new genera.
by J Verseveldt;FM Bayer
Zoologische Verhandelingen Leiden 245 pages 1--131 (1988)
A redescription of the soft coral Alcyonium valdiviae Kükenthal, 1906, with the description of a new species of Litophyton Førskal, 1775, from southern Africa (Octocorallia, Alcyonacea).
by J Verseveldt;GC Williams
Annals of the South African Museum 97 pages 315--328 (1988)
- 109723
Morphology, systematics, and variability of the southern African soft coral Alcyonium variabile (J. Stuart Thomson, 1921) (Octocorallia, Alcyoniidae).
by GC Williams
Annals of the South African Museum 96 pages 241--270 (1986)
Four new species of southern African octocorals (Cnidaria: Alcyonacea), with a further diagnostic revision of the genus Alcyonium Linnaeus, 1758.
by GC Williams
Zoological Journal of the Linnean Society 92 pages 1--26 (1988)
- 10.1111/j.1096-3642.1988.tb01524.x
The Alcyonacea of Southern Africa. Stoloniferous octocorals and soft corals (Coelenterata, Anthozoa).
by GC Williams
Annals of the South African Museum 100 pages 249--358 (1992)
Two new genera of soft corals (Anthozoa: Alcyoniidae) from South Africa, with a discussion of diversity and endemism in the southern African octocorallian fauna.
by GC Williams
Proceedings of the California Academy of Sciences 52 pages 65--75 (2000a)
- 3232
A new species of the soft coral genus Eleutherobia Pütter, 1900 (Coelenterata: Alcyoniidae) from the Tonga Islands.
by GC Williams
Proceedings of the California Academy of Sciences 52 pages 159--169 (2000b)
- 3240
First record of a bioluminescent soft coral: description of a disjunct population of Eleutherobia grayi (Thomson and Dean, 1921) from the Solomon Islands, with a review of bioluminescence in the Octocorallia.
by GC Williams
Proceedings of the California Academy of Sciences 52 pages 209--225 (2001)
Capitate taxa of the soft coral genus Eleutherobia (Octocorallia: Alcyoniidae) from Palau and South Africa; a new species and a new combination.
by GC Williams
Zoologische Verhandelingen Leiden 345 pages 419--436 (2003)
Revisionary systematics of the western Pacific soft coral genus Minabea (Octocorallia: Alcyoniidae), with descriptions of a related new genus and species from the Indo-Pacific.
by GC Williams;P Alderslade
Proceedings of the California Academy of Sciences 51 pages 337--364 (1999)
- 3250
Systematic list of valid octocoral genera.
by GC Williams;S Cairns
A new species of the soft coral genus Eleutherobia Pütter, 1900 (Octocorallia: Alcyoniidae) from South Africa.
by GC Williams;SA Little
Proceedings of the California Academy of Sciences 52 pages 195--208 (2001)
- 3237
by DJ Zwickl

Only known citations between publications in BioNames are listed here.

[1] Four new genera of soft corals (Coelenterata: Octocorallia), with notes on the classification of some established taxa.
by P Alderslade
Zoologische Mededelingen Leiden 74 pages 237--249 (2000)

[2] Key to the genera of Octocorallia exclusive of Pennatulacea (Coelenterata: Anthozoa), with diagnoses of new taxa.
by FM Bayer
Proceedings of the Biological Society of Washington 94 pages 878--901 (1981)
81630

[3] 81630

[4] Taxonomic status of the octocoral genus Bathyalcyon (Alcyoniidae: Anthomastinae), with descriptions of a new subspecies from the Gulf of Mexico and a new species of Anthomastus from Antarctic waters.
by FM Bayer
Precious Corals & Octocoral Research 1 pages 3--13 (1993)

[5] Corals of the south-west Indian Ocean II. Eleutherobiaaurea spec. nov. (Cnidaria, Alcyonacea) from deep reefs on the KwaZulu-Natal coast, South Africa.
by Y Benayahu;M Schleyer
Oceanographic Research Instititute Investigational Reports 68 pages 1--12 (1995)

[6] Phylogenetic relationships within the Octocorallia (Cnidaria: Anthozoa) based on nuclear 18S rRNA sequences.
by EA Berntson;FM Bayer;AG McArthur;SC France
Marine Biology 138 pages 235--246 (2001)
10.1007/s002270000457

[7] 10.1007/s002270000457

[8] A quarter-century of deep-sea malacological exploration in the South and West Paciﬁc: Where do we stand? How far to go?
by P Bouchet;V Héros;P Lozouet;P Maestrati
Tropical Deep-Sea Benthos 25 196 pages 9--40 (2008)

[9] The mitochondrial genome of Paraminabea aldersladei (Cnidaria: Anthozoa: Octocorallia) supports intramolecular recombination as the primary mechanism of gene rearrangement in octocoral mitochondrial genomes.
by SA Brockman;CS McFadden
Genome Biology and Evolution 4 pages 882--894 (2012)
10.1093/gbe/evs074

[10] 10.1093/gbe/evs074

[11] The phylum Cnidaria: A review of phylogenetic patterns and diversity 300 years after Linnaeus.
by M Daly;MR Brugler;P Cartwright;AG Collins;MN Dawson;DG Fautin;SC France;CS McFadden;DM Opresko;E Rodriguez;S Romano;J Stake
Zootaxa 1668 pages 1--766 (2007)

[12] New data on soft corals (Cnidaria: Octocorallia: Alcyonacea) from Nha Trang Bay, South China Sea.
by TN Dautova;OV Savinkin
Zootaxa 2027 pages 1--27 (2009)

[13] by K Fabricius;P Alderslade

[14] Alcyoniid octocorals from Suruga Bay, the Pacific coast of central Japan.
by Y Imahara
Annotationes Zoologicae Japonenses 50 pages 31--35 (1977)
110003353177

[15] 110003353177

[16] MAFFT version 5: improvement in accuracy of multiple sequence alignment.
by K Katoh;K Kuma;H Toh;T Miyata
Nucleic Acids Research 33 pages 511--513 (2005)
10.1093/nar/gki198

[17] 10.1093/nar/gki198

[18] Stoloniferous octocorals (Anthozoa, Octocorallia) from South Africa, with descriptions of a new family of Alcyonacea, a new genus of Clavulariidae, and a new species of Cornularia (Cornulariidae).
by CS McFadden;LP van Ofwegen
Invertebrate Systematics 26 pages 331--356 (2012)
10.1071/IS12035

[19] 10.1071/IS12035

[20] A second, cryptic species of the soft coral genus Incrustatus (Anthozoa: Octocorallia: Clavulariidae) from Tierra del Fuego, Argentina, revealed by DNA barcoding.
by CS McFadden;LP van Ofwegen
Helgoland Marine Research 67 pages 137--147 (2013)
10.1007/s10152-012-0310-7

[21] 10.1007/s10152-012-0310-7

[22] A molecular phylogenetic analysis of reproductive trait evolution in the soft coral genus Alcyonium.
by CS McFadden;RM Donahue;BK Hadland;R Weston
Evolution 55 pages 29--42 (2001)
10.1093/icb/icq056

[23] 10.1093/icb/icq056

[24] A molecular phylogenetic analysis of the Octocorallia (Coelenterata: Anthozoa) based on mitochondrial protein-coding sequences.
by CS McFadden;SC France;JA Sánchez;P Alderslade
Molecular Phylogenetics and Evolution 41 pages 513--527 (2006)
10.1016/j.ympev.2006.06.010

[25] 10.1016/j.ympev.2006.06.010

[26] Molecular phylogenetic insights into the evolution of Octocorallia: a review.
by CS McFadden;JA Sánchez;SC France
Integrative and Comparative Biology 50 pages 389--410 (2010)

[27] Limitations of mitochondrial gene barcoding in the cnidarian sub-class Octocorallia.
by CS McFadden;Y Benayahu;E Pante;JN Thoma;PA Nevarez;SC France
Molecular Ecology Resources 11 pages 19--31 (2011)
10.1111/j.1755-0998.2010.02875.x

[28] 10.1111/j.1755-0998.2010.02875.x

[29] The genus Alcyonium (Octocorallia: Alcyonacea: Alcyoniidae) in Chile.
by LP van Ofwegen;V Häussermann;G Försterra
Zootaxa 1607 pages 1--19 (2007)

[30] Modeltest: testing the model of DNA substitution.
by D Posada;KA Crandall
Bioinformatics 14 pages 817--818 (1998)
10.1093/bioinformatics/14.9.817

[31] 10.1093/bioinformatics/14.9.817

[32] MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space.
by F Ronquist;M Teslenko;P van der Mark;D Ayres;A Darling;S Höhna;B Larget;L Liu;MA Suchard;JP Huelsenbeck
Systematic Biology 61 pages 539--542 (2012)
10.1093/sysbio/sys029

[33] 10.1093/sysbio/sys029

[34] The Alcyonacea of the Siboga Expedition with an addendum to the Gorgonacea.
by JA Thomson;LMI Dean
Siboga Expedition Monograph 13d pages 1--227 (1931)

[35] The Alcyonaria of the Cape of Good Hope and Natal. Alcyonacea.
by JS Thomson
Transactions of the Royal Society of Edinburgh XLVII pages 549--589 (1910)
10.1017/s0080456800005032

[36] 10.1017/s0080456800005032

[37] The alcyonarian genus Bellonella from Japan, with descriptions of two new species.
by H Utinomi
Publications of the Seto Marine Biological Laboratory 6 pages 147--168 (1957)
2433/174581

[38] 2433/174581

[39] Revision of the genera Bellonella, Eleutherobia, Nidalia and Nidaliopsis (Octocorallia: Alcyoniidae and Nidaliidae), with descriptions of two new genera.
by J Verseveldt;FM Bayer
Zoologische Verhandelingen Leiden 245 pages 1--131 (1988)

[40] A redescription of the soft coral Alcyonium valdiviae Kükenthal, 1906, with the description of a new species of Litophyton Førskal, 1775, from southern Africa (Octocorallia, Alcyonacea).
by J Verseveldt;GC Williams
Annals of the South African Museum 97 pages 315--328 (1988)
109723

[41] 109723

[42] Morphology, systematics, and variability of the southern African soft coral Alcyonium variabile (J. Stuart Thomson, 1921) (Octocorallia, Alcyoniidae).
by GC Williams
Annals of the South African Museum 96 pages 241--270 (1986)

[43] Four new species of southern African octocorals (Cnidaria: Alcyonacea), with a further diagnostic revision of the genus Alcyonium Linnaeus, 1758.
by GC Williams
Zoological Journal of the Linnean Society 92 pages 1--26 (1988)
10.1111/j.1096-3642.1988.tb01524.x

[44] 10.1111/j.1096-3642.1988.tb01524.x

[45] The Alcyonacea of Southern Africa. Stoloniferous octocorals and soft corals (Coelenterata, Anthozoa).
by GC Williams
Annals of the South African Museum 100 pages 249--358 (1992)

[46] Two new genera of soft corals (Anthozoa: Alcyoniidae) from South Africa, with a discussion of diversity and endemism in the southern African octocorallian fauna.
by GC Williams
Proceedings of the California Academy of Sciences 52 pages 65--75 (2000a)
3232

[47] 3232

[48] A new species of the soft coral genus Eleutherobia Pütter, 1900 (Coelenterata: Alcyoniidae) from the Tonga Islands.
by GC Williams
Proceedings of the California Academy of Sciences 52 pages 159--169 (2000b)
3240

[49] 3240

[50] First record of a bioluminescent soft coral: description of a disjunct population of Eleutherobia grayi (Thomson and Dean, 1921) from the Solomon Islands, with a review of bioluminescence in the Octocorallia.
by GC Williams
Proceedings of the California Academy of Sciences 52 pages 209--225 (2001)

[51] Capitate taxa of the soft coral genus Eleutherobia (Octocorallia: Alcyoniidae) from Palau and South Africa; a new species and a new combination.
by GC Williams
Zoologische Verhandelingen Leiden 345 pages 419--436 (2003)

[52] Revisionary systematics of the western Pacific soft coral genus Minabea (Octocorallia: Alcyoniidae), with descriptions of a related new genus and species from the Indo-Pacific.
by GC Williams;P Alderslade
Proceedings of the California Academy of Sciences 51 pages 337--364 (1999)
3250

[53] 3250

[54] Systematic list of valid octocoral genera.
by GC Williams;S Cairns

[55] A new species of the soft coral genus Eleutherobia Pütter, 1900 (Octocorallia: Alcyoniidae) from South Africa.
by GC Williams;SA Little
Proceedings of the California Academy of Sciences 52 pages 195--208 (2001)
3237

[56] 3237

[57] by DJ Zwickl

Phylogenetic relationships within the Octocorallia (Cnidaria: Anthozoa) based on nuclear 18S rRNA sequences.

A quarter-century of deep-sea malacological exploration in the South and West Paciﬁc: Where do we stand? How far to go?

The mitochondrial genome of Paraminabea aldersladei (Cnidaria: Anthozoa: Octocorallia) supports intramolecular recombination as the primary mechanism of gene rearrangement in octocoral mitochondrial genomes.

The phylum Cnidaria: A review of phylogenetic patterns and diversity 300 years after Linnaeus.

MAFFT version 5: improvement in accuracy of multiple sequence alignment.

A molecular phylogenetic analysis of reproductive trait evolution in the soft coral genus Alcyonium.

A molecular phylogenetic analysis of the Octocorallia (Coelenterata: Anthozoa) based on mitochondrial protein-coding sequences.

Molecular phylogenetic insights into the evolution of Octocorallia: a review.

Limitations of mitochondrial gene barcoding in the cnidarian sub-class Octocorallia.

Modeltest: testing the model of DNA substitution.

MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space.

Morphology, systematics, and variability of the southern African soft coral Alcyonium variabile (J. Stuart Thomson, 1921) (Octocorallia, Alcyoniidae).

The Alcyonacea of Southern Africa. Stoloniferous octocorals and soft corals (Coelenterata, Anthozoa).

First record of a bioluminescent soft coral: description of a disjunct population of Eleutherobia grayi (Thomson and Dean, 1921) from the Solomon Islands, with a review of bioluminescence in the Octocorallia.

Systematic list of valid octocoral genera.

Molecular phylogenetic evidence supports a new family of octocorals and a new genus of Alcyoniidae (Octocorallia, Alcyonacea)