Two newly recognized species of Hemidactylus (Squamata, Gekkonidae) from the Arabian Peninsula and Sinai, Egypt

doi:10.3897/zookeys.355.6190

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Title	Two newly recognized species of Hemidactylus (Squamata, Gekkonidae) from the Arabian Peninsula and Sinai, Egypt
Author(s)	Jiří Smid Jiri Moravec Lukáš Kratochvíl Vaclav Gvozdika Abdul Karim Nasher Salem M Busais Thomas Wilms Mohammed Y Shobrak Salvador Carranza
Journal	ZooKeys
ISSN	1313-2989
Volume	355
Pages	79--107
DOI	10.3897/zookeys.355.6190
Year	2013
Publisher	Pensoft Publishers
Citation

...

by H Akaike
by J Anderson
by SC Anderson
A key and annotated check-list to the lizards and amphisbaenians of Arabia.
by EN Arnold
Fauna of Saudi Arabia 8 pages 385--435 (1986)
by S Baha El Din
An overview of Egyptian species of Hemidactylus (Gekkonidae), with the description of a new species from the high mountains of South Sinai.
by SM Baha El Din
Zoology in the Middle East 34 pages 27--34 (2005)
- 10.1080/09397140.2005.10638078
Amphibians of the Arabian Peninsula.
by E Balletto;MA Cherchi;J Gasperetti
Fauna of Saudi Arabia 7 pages 318--392 (1985)
by O Boettger
Trustees of the British Museum
by GA Boulenger
Molecular phylogeny of the gecko genus Hemidactylus Oken, 1817 on the mainland of Yemen (Reptilia: Gekkonidae).
by S Busais;U Joger
Zoology in the Middle East 53 pages 25--34 (2011a)
- 10.1080/09397140.2011.10648859
Three new species of Hemidactylus Oken, 1817 from Yemen (Squamata, Gekkonidae).
by SM Busais;U Joger
Vertebrate Zoology 61 pages 267--280 (2011b)
Systematics, biogeography and evolution of Hemidactylus geckos (Reptilia: Gekkonidae) elucidated using mitochondrial DNA sequences.
by S Carranza;EN Arnold
Molecular Phylogenetics and Evolution 38 pages 531--545 (2006)
- 10.1016/j.ympev.2005.07.012
A review of the geckos of the genus Hemidactylus (Squamata: Gekkonidae) from Oman based on morphology, mitochondrial and nuclear data, with descriptions of eight new species.
by S Carranza;EN Arnold
Zootaxa 3378 pages 1--95 (2012)
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis.
by J Castresana
Molecular Biology and Evolution 17 pages 540--552 (2000)
- 10.1093/oxfordjournals.molbev.a026334
TCS: A computer program to estimate gene genealogies.
by M Clement;D Posada;KA Crandall
Molecular Ecology 9 pages 1657--1659 (2000)
- 10.1046/j.1365-294x.2000.01020.x
JModelTest 2: More models, new heuristics and parallel computing.
by D Darriba;GL Taboada;R Doallo;D Posada
Nature Methods 9 (2012)
- 10.1038/nmeth.2109
Confidence limits on Phylogenies: An approach using the bootstrap.
by J Felsenstein
Evolution 39 pages 783--791 (1985)
- 10.2307/2408678
Estimating patterns of reptile biodiversity in remote regions.
by GF Ficetola;A Bonardi;R Sindaco;E Padoa-Schioppa
Journal of Biogeography 40 pages 1202--1211 (2013)
- 10.1111/jbi.12060
Seqphase: A web tool for interconverting phase input/output files and fasta sequence alignments.
by JF Flot
Molecular Ecology Resources 10 pages 162--166 (2010)
- 10.1111/j.1755-0998.2009.02732.x
Geckos der Gattungen Ptyodactylus und Hemidactylus aus der Arabischen Republik Jemen.
by JP Fritz;F Schütte
Bonner zoologische Beiträge 38 pages 115--128 (1987)
- 143997
- 45087791
Snakes of Arabia.
by J Gasperetti
Fauna of Saudi Arabia 9 pages 169--450 (1988)
Turtles of Arabia.
by J Gasperetti;AF Stimson;JD Miller;JP Ross;PR Gasperetti
Fauna of Saudi Arabia 13 pages 170--367 (1993)
A simple, fast, and accurate algorithm to estimate large Phylogenies by maximum likelihood.
by S Guindon;O Gascuel
Systematic Biology 52 pages 696--704 (2003)
- 10.1080/10635150390235520
Phylogeography of the Middle Eastern tree frogs (Hyla, Hylidae, Amphibia) as inferred from nuclear and mitochondrial DNA variation, with a description of a new species.
by V Gvoždík;J Moravec;C Klutsch;P Kotlik
Molecular Phylogenetics and Evolution 55 pages 1146--1166 (2010)
- 10.1016/j.ympev.2010.03.015
- 20307673
by D Harrison;P Bates
by CHGv Heyden
Frequentist properties of bayesian posterior probabilities of phylogenetic trees under simple and complex substitution models.
by JP Huelsenbeck;B Rannala
Systematic Biology 53 pages 904--913 (2004)
- 10.1080/10635150490522629
Haplotype networks can be misleading in the presence of missing data.
by S Joly;MI Stevens;BJ van Vuuren
Systematic Biology 56 pages 857--862 (2007)
- 10.1080/10635150701633153
Recent developments in the MAFFT multiple sequence alignment program.
by K Katoh;H Toh
Briefings in Bioinformatics 9 pages 286--298 (2008)
- 10.1093/bib/bbn013
Frankfurt versus Berlin: The Red Sea explorers Wilhelm Hemprich, Christian Ehrenberg and Eduard Rüppell.
by W Klausewitz
Zoology in the Middle East 27 pages 7--12 (2002)
- 10.1080/09397140.2002.10637935
Revision of the african lizards of the family Gekkonidae.
by A Loveridge
Bulletin of The Museum of Comparative Zoology 98 pages 1--469 (1947)
- 13954
Die herpetologische Sektion des Natur-Museums und Forschungs-Institutes Senckenberg in Frankfurt a. M. nebst einem Verzeichnis ihrer Typen.
by R Mertens
Senckenbergiana Biologica 48 pages 1--106 (1967)
by R Mertens;H Wermuth
A new subspecies of the Mediterranean gecko, Hemidactylus turcicus from the Syrian lava desert.
by J Moravec;W Böhme
Herpetozoa 10 pages 121--128 (1997)
High genetic differentiation within the Hemidactylus turcicus complex (Reptilia: Gekkonidae) in the Levant, with comments on the phylogeny and systematics of the genus.
by J Moravec;L Kratochvíl;ZS Amr;D Jandzik;J Šmíd;V Gvoždík
Zootaxa 2894 pages 21--38 (2011)
When selection deceives phylogeographic interpretation: The case of the Mediterranean house gecko, Hemidactylus turcicus (Linnaeus, 1758).
by C Rato;S Carranza;DJ Harris
Molecular Phylogenetics and Evolution 58 pages 365--373 (2011)
- 10.1016/j.ympev.2010.12.004
MrBayes 3.2: Efficient bayesian phylogenetic inference and model choice across a large model space.
by F Ronquist;M Teslenko;P Van Der Mark;DL Ayres;A Darling;S Höhna;B Larget;L Liu;MA Suchard;JP Huelsenbeck
Systematic Biology 61 pages 539--542 (2012)
- 10.1093/sysbio/sys029
Beiträge zur Herpetologie der Republik Jemen. 3. Geckos des südlichen Jemen und der Insel Sokotra.
by H Rösler;W Wranik
Zoologische Abhandlungen Staatliches Museum fur Tierkunde Dresden 21 pages 113--132 (1998)
by E Rüppell
by E Rüppell
Handbuch der Reptilien und Amphibien Europas
by A Salvador
by H Scott
RaxmlGUI: A graphical front-end for RAxML.
by D Silvestro;I Michalak
Organisms Diversity and Evolution 12 pages 335--337 (2012)
- 10.1007/s13127-011-0056-0
Out of Arabia: A Complex Biogeographic History of Multiple Vicariance and Dispersal Events in the Gecko Genus Hemidactylus (Reptilia: Gekkonidae).
by J Šmíd;S Carranza;L Kratochvíl;V Gvoždík;AK Nasher;J Moravec
PLoS ONE 8 (2013)
- 10.1371/journal.pone.0064018
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models.
by A Stamatakis
Bioinformatics 22 pages 2688--2690 (2006)
- 10.1093/bioinformatics/btl446
A new statistical method for haplotype reconstruction from population data.
by M Stephens;NJ Smith;P Donnelly
American Journal of Human Genetics 68 pages 978--989 (2001)
- 10.1086/319501
Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments.
by G Talavera;J Castresana
Systematic Biology 56 pages 564--577 (2007)
- 10.1080/10635150701472164
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.
by K Tamura;D Peterson;N Peterson;G Stecher;M Nei;S Kumar
Molecular Biology and Evolution 28 pages 2731--2739 (2011)
- 10.1093/molbev/msr121
A new Hemidactylus from Lorestan Province, western Iran, with notes on Hemidactylus robustus Heyden, 1827 (Reptilia: Squamata: Gekkonidae).
by F Torki;U Manthey;M Barts
Sauria 33 pages 47--56 (2011)
The Reptile database. http://www.reptile-database.org/
by P Uetz
Eduard Rüppell – Leben und Werk eines Forschungsreisenden.
by RK Wagner
Papageien 7 pages 244--249 (2008)

Only known citations between publications in BioNames are listed here.

[1] by H Akaike

[2] by J Anderson

[3] by SC Anderson

[4] A key and annotated check-list to the lizards and amphisbaenians of Arabia.
by EN Arnold
Fauna of Saudi Arabia 8 pages 385--435 (1986)

[5] by S Baha El Din

[6] An overview of Egyptian species of Hemidactylus (Gekkonidae), with the description of a new species from the high mountains of South Sinai.
by SM Baha El Din
Zoology in the Middle East 34 pages 27--34 (2005)
10.1080/09397140.2005.10638078

[7] 10.1080/09397140.2005.10638078

[8] Amphibians of the Arabian Peninsula.
by E Balletto;MA Cherchi;J Gasperetti
Fauna of Saudi Arabia 7 pages 318--392 (1985)

[9] by O Boettger

[10] Trustees of the British Museum
by GA Boulenger

[11] Molecular phylogeny of the gecko genus Hemidactylus Oken, 1817 on the mainland of Yemen (Reptilia: Gekkonidae).
by S Busais;U Joger
Zoology in the Middle East 53 pages 25--34 (2011a)
10.1080/09397140.2011.10648859

[12] 10.1080/09397140.2011.10648859

[13] Three new species of Hemidactylus Oken, 1817 from Yemen (Squamata, Gekkonidae).
by SM Busais;U Joger
Vertebrate Zoology 61 pages 267--280 (2011b)

[14] Systematics, biogeography and evolution of Hemidactylus geckos (Reptilia: Gekkonidae) elucidated using mitochondrial DNA sequences.
by S Carranza;EN Arnold
Molecular Phylogenetics and Evolution 38 pages 531--545 (2006)
10.1016/j.ympev.2005.07.012

[15] 10.1016/j.ympev.2005.07.012

[16] A review of the geckos of the genus Hemidactylus (Squamata: Gekkonidae) from Oman based on morphology, mitochondrial and nuclear data, with descriptions of eight new species.
by S Carranza;EN Arnold
Zootaxa 3378 pages 1--95 (2012)

[17] Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis.
by J Castresana
Molecular Biology and Evolution 17 pages 540--552 (2000)
10.1093/oxfordjournals.molbev.a026334

[18] 10.1093/oxfordjournals.molbev.a026334

[19] TCS: A computer program to estimate gene genealogies.
by M Clement;D Posada;KA Crandall
Molecular Ecology 9 pages 1657--1659 (2000)
10.1046/j.1365-294x.2000.01020.x

[20] 10.1046/j.1365-294x.2000.01020.x

[21] JModelTest 2: More models, new heuristics and parallel computing.
by D Darriba;GL Taboada;R Doallo;D Posada
Nature Methods 9 (2012)
10.1038/nmeth.2109

[22] 10.1038/nmeth.2109

[23] Confidence limits on Phylogenies: An approach using the bootstrap.
by J Felsenstein
Evolution 39 pages 783--791 (1985)
10.2307/2408678

[24] 10.2307/2408678

[25] Estimating patterns of reptile biodiversity in remote regions.
by GF Ficetola;A Bonardi;R Sindaco;E Padoa-Schioppa
Journal of Biogeography 40 pages 1202--1211 (2013)
10.1111/jbi.12060

[26] 10.1111/jbi.12060

[27] Seqphase: A web tool for interconverting phase input/output files and fasta sequence alignments.
by JF Flot
Molecular Ecology Resources 10 pages 162--166 (2010)
10.1111/j.1755-0998.2009.02732.x

[28] 10.1111/j.1755-0998.2009.02732.x

[29] Geckos der Gattungen Ptyodactylus und Hemidactylus aus der Arabischen Republik Jemen.
by JP Fritz;F Schütte
Bonner zoologische Beiträge 38 pages 115--128 (1987)
143997
45087791

[30] 143997

[31] 45087791

[32] Snakes of Arabia.
by J Gasperetti
Fauna of Saudi Arabia 9 pages 169--450 (1988)

[33] Turtles of Arabia.
by J Gasperetti;AF Stimson;JD Miller;JP Ross;PR Gasperetti
Fauna of Saudi Arabia 13 pages 170--367 (1993)

[34] A simple, fast, and accurate algorithm to estimate large Phylogenies by maximum likelihood.
by S Guindon;O Gascuel
Systematic Biology 52 pages 696--704 (2003)
10.1080/10635150390235520

[35] 10.1080/10635150390235520

[36] Phylogeography of the Middle Eastern tree frogs (Hyla, Hylidae, Amphibia) as inferred from nuclear and mitochondrial DNA variation, with a description of a new species.
by V Gvoždík;J Moravec;C Klutsch;P Kotlik
Molecular Phylogenetics and Evolution 55 pages 1146--1166 (2010)
10.1016/j.ympev.2010.03.015
20307673

[37] 10.1016/j.ympev.2010.03.015

[38] 20307673

[39] by D Harrison;P Bates

[40] by CHGv Heyden

[41] Frequentist properties of bayesian posterior probabilities of phylogenetic trees under simple and complex substitution models.
by JP Huelsenbeck;B Rannala
Systematic Biology 53 pages 904--913 (2004)
10.1080/10635150490522629

[42] 10.1080/10635150490522629

[43] Haplotype networks can be misleading in the presence of missing data.
by S Joly;MI Stevens;BJ van Vuuren
Systematic Biology 56 pages 857--862 (2007)
10.1080/10635150701633153

[44] 10.1080/10635150701633153

[45] Recent developments in the MAFFT multiple sequence alignment program.
by K Katoh;H Toh
Briefings in Bioinformatics 9 pages 286--298 (2008)
10.1093/bib/bbn013

[46] 10.1093/bib/bbn013

[47] Frankfurt versus Berlin: The Red Sea explorers Wilhelm Hemprich, Christian Ehrenberg and Eduard Rüppell.
by W Klausewitz
Zoology in the Middle East 27 pages 7--12 (2002)
10.1080/09397140.2002.10637935

[48] 10.1080/09397140.2002.10637935

[49] Revision of the african lizards of the family Gekkonidae.
by A Loveridge
Bulletin of The Museum of Comparative Zoology 98 pages 1--469 (1947)
13954

[50] 13954

[51] Die herpetologische Sektion des Natur-Museums und Forschungs-Institutes Senckenberg in Frankfurt a. M. nebst einem Verzeichnis ihrer Typen.
by R Mertens
Senckenbergiana Biologica 48 pages 1--106 (1967)

[52] by R Mertens;H Wermuth

[53] A new subspecies of the Mediterranean gecko, Hemidactylus turcicus from the Syrian lava desert.
by J Moravec;W Böhme
Herpetozoa 10 pages 121--128 (1997)

[54] High genetic differentiation within the Hemidactylus turcicus complex (Reptilia: Gekkonidae) in the Levant, with comments on the phylogeny and systematics of the genus.
by J Moravec;L Kratochvíl;ZS Amr;D Jandzik;J Šmíd;V Gvoždík
Zootaxa 2894 pages 21--38 (2011)

[55] When selection deceives phylogeographic interpretation: The case of the Mediterranean house gecko, Hemidactylus turcicus (Linnaeus, 1758).
by C Rato;S Carranza;DJ Harris
Molecular Phylogenetics and Evolution 58 pages 365--373 (2011)
10.1016/j.ympev.2010.12.004

[56] 10.1016/j.ympev.2010.12.004

[57] MrBayes 3.2: Efficient bayesian phylogenetic inference and model choice across a large model space.
by F Ronquist;M Teslenko;P Van Der Mark;DL Ayres;A Darling;S Höhna;B Larget;L Liu;MA Suchard;JP Huelsenbeck
Systematic Biology 61 pages 539--542 (2012)
10.1093/sysbio/sys029

[58] 10.1093/sysbio/sys029

[59] Beiträge zur Herpetologie der Republik Jemen. 3. Geckos des südlichen Jemen und der Insel Sokotra.
by H Rösler;W Wranik
Zoologische Abhandlungen Staatliches Museum fur Tierkunde Dresden 21 pages 113--132 (1998)

[60] by E Rüppell

[61] by E Rüppell

[62] Handbuch der Reptilien und Amphibien Europas
by A Salvador

[63] by H Scott

[64] RaxmlGUI: A graphical front-end for RAxML.
by D Silvestro;I Michalak
Organisms Diversity and Evolution 12 pages 335--337 (2012)
10.1007/s13127-011-0056-0

[65] 10.1007/s13127-011-0056-0

[66] Out of Arabia: A Complex Biogeographic History of Multiple Vicariance and Dispersal Events in the Gecko Genus Hemidactylus (Reptilia: Gekkonidae).
by J Šmíd;S Carranza;L Kratochvíl;V Gvoždík;AK Nasher;J Moravec
PLoS ONE 8 (2013)
10.1371/journal.pone.0064018

[67] 10.1371/journal.pone.0064018

[68] RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models.
by A Stamatakis
Bioinformatics 22 pages 2688--2690 (2006)
10.1093/bioinformatics/btl446

[69] 10.1093/bioinformatics/btl446

[70] A new statistical method for haplotype reconstruction from population data.
by M Stephens;NJ Smith;P Donnelly
American Journal of Human Genetics 68 pages 978--989 (2001)
10.1086/319501

[71] 10.1086/319501

[72] Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments.
by G Talavera;J Castresana
Systematic Biology 56 pages 564--577 (2007)
10.1080/10635150701472164

[73] 10.1080/10635150701472164

[74] MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.
by K Tamura;D Peterson;N Peterson;G Stecher;M Nei;S Kumar
Molecular Biology and Evolution 28 pages 2731--2739 (2011)
10.1093/molbev/msr121

[75] 10.1093/molbev/msr121

[76] A new Hemidactylus from Lorestan Province, western Iran, with notes on Hemidactylus robustus Heyden, 1827 (Reptilia: Squamata: Gekkonidae).
by F Torki;U Manthey;M Barts
Sauria 33 pages 47--56 (2011)

[77] The Reptile database. http://www.reptile-database.org/
by P Uetz

[78] Eduard Rüppell – Leben und Werk eines Forschungsreisenden.
by RK Wagner
Papageien 7 pages 244--249 (2008)

Amphibians of the Arabian Peninsula.

Molecular phylogeny of the gecko genus Hemidactylus Oken, 1817 on the mainland of Yemen (Reptilia: Gekkonidae).

Systematics, biogeography and evolution of Hemidactylus geckos (Reptilia: Gekkonidae) elucidated using mitochondrial DNA sequences.

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis.

TCS: A computer program to estimate gene genealogies.

JModelTest 2: More models, new heuristics and parallel computing.

Confidence limits on Phylogenies: An approach using the bootstrap.

Estimating patterns of reptile biodiversity in remote regions.

Seqphase: A web tool for interconverting phase input/output files and fasta sequence alignments.

Snakes of Arabia.

Turtles of Arabia.

A simple, fast, and accurate algorithm to estimate large Phylogenies by maximum likelihood.

Frequentist properties of bayesian posterior probabilities of phylogenetic trees under simple and complex substitution models.

Haplotype networks can be misleading in the presence of missing data.

Recent developments in the MAFFT multiple sequence alignment program.

Frankfurt versus Berlin: The Red Sea explorers Wilhelm Hemprich, Christian Ehrenberg and Eduard Rüppell.

When selection deceives phylogeographic interpretation: The case of the Mediterranean house gecko, Hemidactylus turcicus (Linnaeus, 1758).

MrBayes 3.2: Efficient bayesian phylogenetic inference and model choice across a large model space.

Beiträge zur Herpetologie der Republik Jemen. 3. Geckos des südlichen Jemen und der Insel Sokotra.

Handbuch der Reptilien und Amphibien Europas

RaxmlGUI: A graphical front-end for RAxML.

Out of Arabia: A Complex Biogeographic History of Multiple Vicariance and Dispersal Events in the Gecko Genus Hemidactylus (Reptilia: Gekkonidae).

RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models.

A new statistical method for haplotype reconstruction from population data.

Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments.

MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

The Reptile database. http://www.reptile-database.org/

Eduard Rüppell – Leben und Werk eines Forschungsreisenden.

Two newly recognized species of Hemidactylus (Squamata, Gekkonidae) from the Arabian Peninsula and Sinai, Egypt

Authors