Myotis Kaup, 1829
Myotis thysanodes subsp. aztecus Miller & G. M. Allen, 1928
Myotis thysanodes subsp. pahasapensis Jones & Genoways, 1967
Myotis thysanodes subsp. thysanodes Miller, 1897
Myotis thysanodes subsp. vespertinus Manning & Jones, 1988