Microcotylidae Taschenberg, 1879
Microcotyle acanthurum Parona & Perugia, 1896
Microcotyle archosargi MacCallum, 1931
Microcotyle arripis Sandars, 1945
Microcotyle atriobursata (Caballero & Bravo-Hollis, 1972) Mamaev, 1986
Microcotyle australis Murray, 1931
Microcotyle bassensis Murray, 1931
Microcotyle brevis Dillon & Hargis, 1965
Microcotyle caballeroi Bravo-Hollis, 1960
Microcotyle canthari van Beneden & Hesse, 1863
Microcotyle caudata Goto, 1894
Microcotyle centrodonti Brown, 1929
Microcotyle centropristis MacCallum, 1915
Microcotyle cephalus Azim, 1939
Microcotyle chiri
Microcotyle chrysophrii van Beneden & Hesse, 1863
Microcotyle constricta Robinson, 1961
Microcotyle donavini van Beneden & Hesse, 1863
Microcotyle draconis Briot, 1904
Microcotyle emmelichthyops Yamaguti, 1968
Microcotyle erythrini van Beneden & Hesse, 1863
Microcotyle eueides MacCallum & MacCallum, 1913
Microcotyle fistulariae Mamaev, 1989
Microcotyle fusiformis Goto, 1894
Microcotyle guanabarensis Bravo-Hollis & Kohn, 1990
Microcotyle hainanensis Zhang & Wang, 2001
Microcotyle helotes Sandars, 1944
Microcotyle hiatulae Goto, 1894
Microcotyle lichiae Ariola, 1899
Microcotyle longicauda Goto, 1899
Microcotyle longirostri Robinson, 1961
Microcotyle macropharynx Mamaev, 1989
Microcotyle macroura
Microcotyle mormyri Lorenz, 1878
Microcotyle mouwoi Ishii & Sawada, 1938
Microcotyle mugilis Vogt, 1878
Microcotyle nemadactylus Dillon & Hargis, 1965
Microcotyle neozealanicus Dillon & Hargis, 1965
Microcotyle oceanicum Caballero, Bravo & Grocott, 1953
Microcotyle odacis Sandars, 1945
Microcotyle otrynteri Pearse, 1949
Microcotyle pacifica
Microcotyle pagrosomi Murray, 1931
Microcotyle pancerii Sonsino, 1891
Microcotyle parsillaginae Sandars, 1945
Microcotyle pentapodi Sandars, 1944
Microcotyle peprili Pearse, 1949
Microcotyle pomatomi Goto, 1899
Microcotyle pontica Pogorel'tseva, 1964
Microcotyle poronoti MacCallum, 1915
Microcotyle priacanthi Meserve, 1938
Microcotyle pseudomugilis Hargis, 1957
Microcotyle pseudopercis Amato & Cezar, 1994
Microcotyle sciaenae Murray, 1931
Microcotyle sebastis Goto, 1894
Microcotyle seriolae Yamaguti, 1940
Microcotyle sillaginae Woolcock, 1936
Microcotyle stenotomi Goto, 1899
Microcotyle tampicensis (Caballero & Bravo-Hollis, 1972) Mamaev, 1986
Microcotyle victoriae Woolcock, 1936
Microcotyle zalembius