A new species of Orobdella (Hirundinida, Arhynchobdellida, Orobdellidae) from Taipei, Taiwan

doi:10.3897/zookeys.207.3334

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Title	A new species of Orobdella (Hirundinida, Arhynchobdellida, Orobdellidae) from Taipei, Taiwan
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Author(s)	Takafumi Nakano
Journal	ZooKeys
ISSN	1313-2989
Volume	207
Pages	49--63
DOI	10.3897/zookeys.207.3334
PMC	PMC3409684
PMID	22855640
ZooBank	d10c419d-4fb1-406d-b805-2b65a193e1c3
PDF	http://www.pensoft.net/inc/journals/download.php?fileTable=J_GALLEYS&fileId=4753
SHA1	972f8cbbab4397d77b6286ed86e7ea7e9659556a
Year	2012
Citation

...

A new look at the statistical model identification.
by H Akaike
IEEE Transactions on Automatic Control 19 pages 716--723 (1974)
- 10.1109/TAC.1974.1100705
Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference.
by G Altekar;S Dwarkadas;JP Huelsenbeck;F Ronquist
Bioinformatics 20 pages 407--415 (2004)
- 10.1093/bioinformatics/btg427
Higher level relationships of leeches (Annelida: Clitellata: Euhirudinea) based on morphology and gene sequences.
by K Apakupakul;ME Siddall;EM Burreson
Molecular Phylogenetics and Evolution 12 pages 350--359 (1999)
- 10.1006/mpev.1999.0639
Hirudinées du Musée de Leyde. Notes from the Leyden Museum 19: 73–113.
by R Blanchard
- 111627
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis.
by J Castresana
Molecular Biology and Evolution 17 pages 540--552 (2000)
- 10.1093/oxfordjournals.molbev.a026334
Histone H3 and U2 snRNA DNA sequences and arthropod molecular evolution.
by DJ Colgan;A McLauchlan;GDF Wilson;SP Livingston;GD Edgecombe;J Macaranas;G Cassis;MR Gray
Australian Journal of Zoology 46 pages 419--437 (1998)
- 10.1071/ZO98048
Confidence limits on phylogenies: an approach using the bootstrap.
by J Felsenstein
Evolution 39 pages 783--791 (1985)
- 10.2307/2408678
DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates.
by O Folmer;M Black;W Hoeh;R Lutz;R Vrijenhoek
Molecular Marine Biology and Biotechnology 3 pages 294--299 (1994)
The first terrestrial leech—Orobdella whitmani Oka (Hirudinel, Herpobdellidae)—in the fauna of the USSR: A Tertiary relict of forests of the southern Maritime Territory.
by MS Gilyarov;EI Lukin;TS Perel
Doklady Akademii Nauk SSSR 188 pages 235--237 (1969)
An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis.
by DM Hillis;JJ Bull
Systematic Biology 42 pages 182--192 (1993)
- 10.1093/sysbio/42.2.182
Secondary structure prediction for aligned RNA sequences.
by IL Hofacker;M Fekete;PF Stadler
Journal of Molecular Biology 319 pages 1059--1066 (2002)
- 10.1016/S0022-2836(02)00308-X
Bayesian inference of phylogeny and its impact on evolutionary biology.
by JP Huelsenbeck;F Ronquist;R Nielsen;JP Bollback
Science 294 pages 2310--2314 (2001)
- 10.1126/science.1065889
TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics. BMC Evolutionary Biology 4: 18.
by G Jobb;A von Haeseler;K Strimmer
- 10.1186/1471-2148-4-18
Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework. BMC Bioinformatics 9: 212.
by K Katoh;H Toh
- 10.1186/1471-2105-9-212
Leech Fauna of Taiwan.
by Y-T Lai;J-H Chen
Molecular systematics of the eastern fence lizard (Sceloporus undulatus): a comparison of parsimony, likelihood, and Bayesian approaches.
by AD Leaché;TW Reeder
Systematic Biology 51 pages 44--68 (2002)
- 10.1080/106351502753475871
The equilibrium partition function and base pair binding probabilities for RNA secondary structure.
by JS McCaskill
Biopolymers 29 pages 1105--1119 (1990)
- 10.1002/bip.360290621
The segmentation (metamerism and annulation) of the Hirudinea. In: Harding WA, Moore JP. The Fauna of British India, including Ceylon and Burma Hirudinea. Taylor and Francis, London, 1–12.
by JP Moore
Leeches from Borneo with descriptions of new species.
by JP Moore
Proceedings of the Academy of Natural Sciences of Philadelphia 81 pages 267--295 (1929)
- 4064069
A new species of the genus Orobdella (Hirudinida: Arhynchobdellida: Gastrostomobdellidae) from Kumamoto, Japan, and a redescription of Orobdella whitmani with the designation of the lectotype.
by T Nakano
Zoological Science 27 pages 880--887 (2010)
- 10.2108/zsj.27.880
- 21039128
A new species of Orobdella (Hirudinida: Arhynchobdellida: Gastrostomobdellidae) from Tsushima Island, Japan.
by T Nakano
Species Diversity 16 pages 39--47 (2011a)
Redescription of Orobdella ijimai (Hirudinida: Arhynchobdellida: Gastrostomobdellidae), and two new species of Orobdella from the Ryukyu Archipelago, Japan.
by T Nakano
Zootaxa 2998 pages 1--15 (2011b)
A new species of Orobdella (Hirudinida, Arhynchobdellida, Gastrostomobdellidae) and redescription of Orobdella kawakatsuorum from Hokkaido, Japan with the phylogenetic position of the new species.
by T Nakano
ZooKeys 169 pages 9--30 (2012a)
- 10.3897/zookeys.169.2425
- 3278812
- 22371683
A new sexannulate species of Orobdella (Hirudinida, Arhynchobdellida, Orobdellidae) from Yakushima Island, Japan.
by T Nakano
ZooKeys 181 pages 79--93 (2012b)
- 10.3897/zookeys.181.2932
- 3332023
- 22539913
Redescription of Orobdella octonaria (Hirudinida: Arhynchobdellida: Orobdellidae) with designation of a lectotype. Species Diversity.
by T Nakano
Phylogenetic position of gastrostomobdellid leeches (Hirudinida, Arhynchobdellida, Erpobdelliformes) and a new family for the genus Orobdella.
by T Nakano;Z Ramlah;T Hikida
Zoologica Scripta 41 pages 177--185 (2012)
- 10.1111/j.1463-6409.2011.00506.x
First record of Orobdella tsushimensis (Hirudinida: Arhynchobdellida: Orobdellidae) from Korea (Gageodo Island) and its molecular phylogenetic position within the genus. Species Diversity.
by T Nakano;H-Y Seo
Phylogeny of macrophagous leeches (Hirudinea, Clitellata) based on molecular data and evaluation of the barcoding locus.
by A Oceguera-Figueroa;AJ Phillips;B Pacheco-Chaves;WK Reeves;ME Siddall
Zoologica Scripta 40 pages 194--203 (2011)
- 10.1111/j.1463-6409.2010.00465.x
On some new Japanese land leeches. (Orobdella nov. gen.).
by A Oka
The Journal of the College of Science, Imperial University, Japan 8 pages 275--306 (1895)
O występowaniu pijawki Erpobdella octoculata (L.) w Japonii.
by LK Pawłowski
Zeszyty Naukowe Uniwersytetu Łódzkiego Nauki Matematiczno-przyrodnicze Seria II 12 pages 127--136 (1962)
Tracer. 1.5: http://tree.bio.ed.ac.uk/software/tracer/
by A Rambaut;AJ Drummond
Gastrostomobdellidae f. nov. and a new genus for the gastroporous Orobdella octonaria Oka, 1895, of Japan (Hirudinoidea: Arhynchobdellae).
by LR Richardson
Bulletin of the National Science Museum (Tokyo) 14 pages 585--602 (1971)
A new species of terricolous leeches in Japan (Gastrostomobdellidae, Orobdella).
by LR Richardson
Bulletin of the National Science Museum Series A (Zoology) 1 pages 39--56 (1975)
- 110004312000
MrBayes 3: Bayesian phylogenetic inference under mixed models.
by F Ronquist;JP Huelsenbeck
Bioinformatics 19 pages 1572--1574 (2003)
- 10.1093/bioinformatics/btg180
Leech Biology and Behaviour.
by RT Sawyer
Estimating the dimension of a model.
by G Schwarz
The Annals of Statistics 6 pages 461--464 (1978)
- 10.1214/aos/1176344136
A fast structural multiple alignment method for long RNA sequences. BMC Bioinformatics 9: 33.
by Y Tabei;H Kiryu;T Kin;K Asai
- 10.1186/1471-2105-9-33
Phylogears. 2.0: http://www.fifthdimension.jp/
by AS Tanabe
Kakusan4 and Aminosan: two programs for comparing nonpartitioned, proportional and separate models for combined molecular phylogenetic analyses of multilocus sequence data.
by AS Tanabe
Molecular Ecology Resources 11 pages 914--921 (2011)
- 10.1111/j.1755-0998.2011.03021.x

Only known citations between publications in BioNames are listed here.

[1] A new look at the statistical model identification.
by H Akaike
IEEE Transactions on Automatic Control 19 pages 716--723 (1974)
10.1109/TAC.1974.1100705

[2] 10.1109/TAC.1974.1100705

[3] Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference.
by G Altekar;S Dwarkadas;JP Huelsenbeck;F Ronquist
Bioinformatics 20 pages 407--415 (2004)
10.1093/bioinformatics/btg427

[4] 10.1093/bioinformatics/btg427

[5] Higher level relationships of leeches (Annelida: Clitellata: Euhirudinea) based on morphology and gene sequences.
by K Apakupakul;ME Siddall;EM Burreson
Molecular Phylogenetics and Evolution 12 pages 350--359 (1999)
10.1006/mpev.1999.0639

[6] 10.1006/mpev.1999.0639

[7] Hirudinées du Musée de Leyde. Notes from the Leyden Museum 19: 73–113.
by R Blanchard
111627

[8] 111627

[9] Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis.
by J Castresana
Molecular Biology and Evolution 17 pages 540--552 (2000)
10.1093/oxfordjournals.molbev.a026334

[10] 10.1093/oxfordjournals.molbev.a026334

[11] Histone H3 and U2 snRNA DNA sequences and arthropod molecular evolution.
by DJ Colgan;A McLauchlan;GDF Wilson;SP Livingston;GD Edgecombe;J Macaranas;G Cassis;MR Gray
Australian Journal of Zoology 46 pages 419--437 (1998)
10.1071/ZO98048

[12] 10.1071/ZO98048

[13] Confidence limits on phylogenies: an approach using the bootstrap.
by J Felsenstein
Evolution 39 pages 783--791 (1985)
10.2307/2408678

[14] 10.2307/2408678

[15] DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates.
by O Folmer;M Black;W Hoeh;R Lutz;R Vrijenhoek
Molecular Marine Biology and Biotechnology 3 pages 294--299 (1994)

[16] The first terrestrial leech—Orobdella whitmani Oka (Hirudinel, Herpobdellidae)—in the fauna of the USSR: A Tertiary relict of forests of the southern Maritime Territory.
by MS Gilyarov;EI Lukin;TS Perel
Doklady Akademii Nauk SSSR 188 pages 235--237 (1969)

[17] An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis.
by DM Hillis;JJ Bull
Systematic Biology 42 pages 182--192 (1993)
10.1093/sysbio/42.2.182

[18] 10.1093/sysbio/42.2.182

[19] Secondary structure prediction for aligned RNA sequences.
by IL Hofacker;M Fekete;PF Stadler
Journal of Molecular Biology 319 pages 1059--1066 (2002)
10.1016/S0022-2836(02)00308-X

[20] 10.1016/S0022-2836(02)00308-X

[21] Bayesian inference of phylogeny and its impact on evolutionary biology.
by JP Huelsenbeck;F Ronquist;R Nielsen;JP Bollback
Science 294 pages 2310--2314 (2001)
10.1126/science.1065889

[22] 10.1126/science.1065889

[23] TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics. BMC Evolutionary Biology 4: 18.
by G Jobb;A von Haeseler;K Strimmer
10.1186/1471-2148-4-18

[24] 10.1186/1471-2148-4-18

[25] Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework. BMC Bioinformatics 9: 212.
by K Katoh;H Toh
10.1186/1471-2105-9-212

[26] 10.1186/1471-2105-9-212

[27] Leech Fauna of Taiwan.
by Y-T Lai;J-H Chen

[28] Molecular systematics of the eastern fence lizard (Sceloporus undulatus): a comparison of parsimony, likelihood, and Bayesian approaches.
by AD Leaché;TW Reeder
Systematic Biology 51 pages 44--68 (2002)
10.1080/106351502753475871

[29] 10.1080/106351502753475871

[30] The equilibrium partition function and base pair binding probabilities for RNA secondary structure.
by JS McCaskill
Biopolymers 29 pages 1105--1119 (1990)
10.1002/bip.360290621

[31] 10.1002/bip.360290621

[32] The segmentation (metamerism and annulation) of the Hirudinea. In: Harding WA, Moore JP. The Fauna of British India, including Ceylon and Burma Hirudinea. Taylor and Francis, London, 1–12.
by JP Moore

[33] Leeches from Borneo with descriptions of new species.
by JP Moore
Proceedings of the Academy of Natural Sciences of Philadelphia 81 pages 267--295 (1929)
4064069

[34] 4064069

[35] A new species of the genus Orobdella (Hirudinida: Arhynchobdellida: Gastrostomobdellidae) from Kumamoto, Japan, and a redescription of Orobdella whitmani with the designation of the lectotype.
by T Nakano
Zoological Science 27 pages 880--887 (2010)
10.2108/zsj.27.880
21039128

[36] 10.2108/zsj.27.880

[37] 21039128

[38] A new species of Orobdella (Hirudinida: Arhynchobdellida: Gastrostomobdellidae) from Tsushima Island, Japan.
by T Nakano
Species Diversity 16 pages 39--47 (2011a)

[39] Redescription of Orobdella ijimai (Hirudinida: Arhynchobdellida: Gastrostomobdellidae), and two new species of Orobdella from the Ryukyu Archipelago, Japan.
by T Nakano
Zootaxa 2998 pages 1--15 (2011b)

[40] A new species of Orobdella (Hirudinida, Arhynchobdellida, Gastrostomobdellidae) and redescription of Orobdella kawakatsuorum from Hokkaido, Japan with the phylogenetic position of the new species.
by T Nakano
ZooKeys 169 pages 9--30 (2012a)
10.3897/zookeys.169.2425
3278812
22371683

[41] 10.3897/zookeys.169.2425

[42] 3278812

[43] 22371683

[44] A new sexannulate species of Orobdella (Hirudinida, Arhynchobdellida, Orobdellidae) from Yakushima Island, Japan.
by T Nakano
ZooKeys 181 pages 79--93 (2012b)
10.3897/zookeys.181.2932
3332023
22539913

[45] 10.3897/zookeys.181.2932

[46] 3332023

[47] 22539913

[48] Redescription of Orobdella octonaria (Hirudinida: Arhynchobdellida: Orobdellidae) with designation of a lectotype. Species Diversity.
by T Nakano

[49] Phylogenetic position of gastrostomobdellid leeches (Hirudinida, Arhynchobdellida, Erpobdelliformes) and a new family for the genus Orobdella.
by T Nakano;Z Ramlah;T Hikida
Zoologica Scripta 41 pages 177--185 (2012)
10.1111/j.1463-6409.2011.00506.x

[50] 10.1111/j.1463-6409.2011.00506.x

[51] First record of Orobdella tsushimensis (Hirudinida: Arhynchobdellida: Orobdellidae) from Korea (Gageodo Island) and its molecular phylogenetic position within the genus. Species Diversity.
by T Nakano;H-Y Seo

[52] Phylogeny of macrophagous leeches (Hirudinea, Clitellata) based on molecular data and evaluation of the barcoding locus.
by A Oceguera-Figueroa;AJ Phillips;B Pacheco-Chaves;WK Reeves;ME Siddall
Zoologica Scripta 40 pages 194--203 (2011)
10.1111/j.1463-6409.2010.00465.x

[53] 10.1111/j.1463-6409.2010.00465.x

[54] On some new Japanese land leeches. (Orobdella nov. gen.).
by A Oka
The Journal of the College of Science, Imperial University, Japan 8 pages 275--306 (1895)

[55] O występowaniu pijawki Erpobdella octoculata (L.) w Japonii.
by LK Pawłowski
Zeszyty Naukowe Uniwersytetu Łódzkiego Nauki Matematiczno-przyrodnicze Seria II 12 pages 127--136 (1962)

[56] Tracer. 1.5: http://tree.bio.ed.ac.uk/software/tracer/
by A Rambaut;AJ Drummond

[57] Gastrostomobdellidae f. nov. and a new genus for the gastroporous Orobdella octonaria Oka, 1895, of Japan (Hirudinoidea: Arhynchobdellae).
by LR Richardson
Bulletin of the National Science Museum (Tokyo) 14 pages 585--602 (1971)

[58] A new species of terricolous leeches in Japan (Gastrostomobdellidae, Orobdella).
by LR Richardson
Bulletin of the National Science Museum Series A (Zoology) 1 pages 39--56 (1975)
110004312000

[59] 110004312000

[60] MrBayes 3: Bayesian phylogenetic inference under mixed models.
by F Ronquist;JP Huelsenbeck
Bioinformatics 19 pages 1572--1574 (2003)
10.1093/bioinformatics/btg180

[61] 10.1093/bioinformatics/btg180

[62] Leech Biology and Behaviour.
by RT Sawyer

[63] Estimating the dimension of a model.
by G Schwarz
The Annals of Statistics 6 pages 461--464 (1978)
10.1214/aos/1176344136

[64] 10.1214/aos/1176344136

[65] A fast structural multiple alignment method for long RNA sequences. BMC Bioinformatics 9: 33.
by Y Tabei;H Kiryu;T Kin;K Asai
10.1186/1471-2105-9-33

[66] 10.1186/1471-2105-9-33

[67] Phylogears. 2.0: http://www.fifthdimension.jp/
by AS Tanabe

[68] Kakusan4 and Aminosan: two programs for comparing nonpartitioned, proportional and separate models for combined molecular phylogenetic analyses of multilocus sequence data.
by AS Tanabe
Molecular Ecology Resources 11 pages 914--921 (2011)
10.1111/j.1755-0998.2011.03021.x

[69] 10.1111/j.1755-0998.2011.03021.x

A new look at the statistical model identification.

Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference.

Higher level relationships of leeches (Annelida: Clitellata: Euhirudinea) based on morphology and gene sequences.

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis.

Histone H3 and U2 snRNA DNA sequences and arthropod molecular evolution.

Confidence limits on phylogenies: an approach using the bootstrap.

DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates.

The first terrestrial leech—Orobdella whitmani Oka (Hirudinel, Herpobdellidae)—in the fauna of the USSR: A Tertiary relict of forests of the southern Maritime Territory.

An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis.

Secondary structure prediction for aligned RNA sequences.

Bayesian inference of phylogeny and its impact on evolutionary biology.

TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics. BMC Evolutionary Biology 4: 18.

Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework. BMC Bioinformatics 9: 212.

Leech Fauna of Taiwan.

Molecular systematics of the eastern fence lizard (Sceloporus undulatus): a comparison of parsimony, likelihood, and Bayesian approaches.

The equilibrium partition function and base pair binding probabilities for RNA secondary structure.

The segmentation (metamerism and annulation) of the Hirudinea. In: Harding WA, Moore JP. The Fauna of British India, including Ceylon and Burma Hirudinea. Taylor and Francis, London, 1–12.

Redescription of Orobdella octonaria (Hirudinida: Arhynchobdellida: Orobdellidae) with designation of a lectotype. Species Diversity.

First record of Orobdella tsushimensis (Hirudinida: Arhynchobdellida: Orobdellidae) from Korea (Gageodo Island) and its molecular phylogenetic position within the genus. Species Diversity.

Phylogeny of macrophagous leeches (Hirudinea, Clitellata) based on molecular data and evaluation of the barcoding locus.

Tracer. 1.5: http://tree.bio.ed.ac.uk/software/tracer/

MrBayes 3: Bayesian phylogenetic inference under mixed models.

Leech Biology and Behaviour.

Estimating the dimension of a model.

A fast structural multiple alignment method for long RNA sequences. BMC Bioinformatics 9: 33.

Phylogears. 2.0: http://www.fifthdimension.jp/

Kakusan4 and Aminosan: two programs for comparing nonpartitioned, proportional and separate models for combined molecular phylogenetic analyses of multilocus sequence data.

A new species of Orobdella (Hirundinida, Arhynchobdellida, Orobdellidae) from Taipei, Taiwan

Authors