A new species of Orobdella (Hirudinida, Arhynchobdellida, Gastrostomobdellidae) and redescription of O. kawakatsuorum from Hokkaido, Japan with the phylogenetic position of the new species

doi:10.3897/zookeys.169.2425

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Title	A new species of Orobdella (Hirudinida, Arhynchobdellida, Gastrostomobdellidae) and redescription of O. kawakatsuorum from Hokkaido, Japan with the phylogenetic position of the new species
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Author(s)	Takafumi Nakano
Journal	ZooKeys
ISSN	1313-2989
Volume	169
Pages	9--30
DOI	10.3897/zookeys.169.2425
PMC	PMC3278812
PMID	22371683
ZooBank	8f79801c-30da-4f85-8cff-4cef42732286
PDF	http://www.pensoft.net/inc/journals/download.php?fileTable=J_GALLEYS&fileId=3866
SHA1	37a8539441f57ac6ba92078b55dead18ef36be6b
Year	2012
Citation

...

A new look at the statistical model identification.
by H Akaike
IEEE Transactions on Automatic Control 19 pages 716--723 (1974)
- 10.1109/TAC.1974.1100705
Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference.
by G Altekar;S Dwarkadas;JP Huelsenbeck;F Ronquist
Bioinformatics 20 pages 407--415 (2004)
- 10.1093/bioinformatics/btg427
Hirudinées du Musée de Leyde.
by R Blanchard
Notes from the Leyden Museum 19 pages 73--113 (1897)
- 111627
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis.
by J Castresana
Molecular Biology and Evolution 17 pages 540--552 (2000)
The unholy trinitiy: taxonomy, species delimitation and DNA barcoding.
by R DeSalle;MG Egan;ME Siddall
Philosophical Transactions of the Royal Society of London B Biological Sciences 360 pages 1905--1916 (2005)
- 10.1098/rstb.2005.1722
Confidence limits on phylogenies: an approach using the bootstrap.
by J Felsenstein
Evolution 39 pages 783--791 (1985)
- 10.2307/2408678
DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates.
by O Folmer;M Black;W Hoeh;R Lutz;R Vrijenhoek
Molecular Marine Biology and Biotechnology 3 pages 294--299 (1994)
The first terrestrial leech in fauna of the USSR, Orobdella whitmani Oka (Hirudinea, Herpobdellidae), a Tertiary relict of forests of the southern Maritime Region.
by MS Gilyarov;EI Lukin;TS Perel
Doklady Akademii Nauk SSSR 188 pages 235--237 (1969)
An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis.
by DM Hillis;JJ Bull
Systematic Biology 42 pages 182--192 (1993)
Secondary structure prediction for aligned RNA sequences.
by IL Hofacker;M Fekete;PF Stadler
Journal of Molecular Biology 319 pages 1059--1066 (2002)
- 10.1016/S0022-2836(02)00308-X
Bayesian inference of phylogeny and its impact on evolutionary biology.
by JP Huelsenbeck;F Ronquist;R Nielsen;JP Bollback
Science 294 pages 2310--2314 (2001)
- 10.1126/science.1065889
TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics. BMC Evolutionary Biology 4: 18.
by G Jobb;A von Haeseler;K Strimmer
- 10.1186/1471-2148-4-18
Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework. BMC Bioinformatics 9: 212.
by K Katoh;H Toh
- 10.1186/1471-2105-9-212
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences.
by M Kimura
Journal of Molecular Evolution 16 pages 111--120 (1980)
- 10.1007/BF01731581
Molecular systematics of the eastern fence lizard (Sceloporus undulatus): a comparison of parsimony, likelihood, and Bayesian approaches.
by AD Leaché;TW Reeder
Systematic Biology 51 pages 44--68 (2002)
- 10.1080/106351502753475871
The equilibrium partition function and base pair binding probabilities for RNA secondary structure.
by JS McCaskill
Biopolymers 29 pages 1105--1119 (1990)
- 10.1002/bip.360290621
The segmentation (metamerism and annulation) of the Hirudinea.
by JP Moore
Leeches from Borneo with descriptions of new species.
by JP Moore
Proceedings of the Academy of Natural Sciences of Philadelphia 81 pages 267--295 (1929)
- 4064069
A new species of the genus Orobdella (Hirudinida: Arhynchobdellida: Gastrostomobdellidae) from Kumamoto, Japan, and a redescription of O. whitmani with the designation of the lectotype.
by T Nakano
Zoological Science 27 pages 880--887 (2010)
- 10.2108/zsj.27.880
- 21039128
A new species of Orobdella (Hirudinida: Arhynchobdellida: Gastrostomobdellidae) from Tsushima Island, Japan.
by T Nakano
Species Diversity 16 pages 39--47 (2011a)
Redescription of Orobdella ijimai (Hirudinida: Arhynchobdellida: Gastrostomobdellidae), and two new species of Orobdella from the Ryukyu Archipelago, Japan.
by T Nakano
Zootaxa 2998 pages 1--15 (2011b)
Phylogenetic position of gastrostomobdellid leeches (Hirudinida, Arhynchobdellida, Erpobdelliformes) and a new family for the genus Orobdella. Zoologica Scripta.
by T Nakano;Z Ramlah;T Hikida
- 10.1111/j.1463-6409.2011.00506.x
Parapatric distribution of the lizards Plestiodon (formerly Eumeces) latiscutatus and P.
by T Okamoto;J Motokawa;M Toda;T Hikida
japonicus (Reptilia: Scinidae) around the Izu Peninsula, central Japan, and its biogeographic implications Zoological Science 23 pages 419--425 (2006)
- 10.2108/zsj.23.419
O występowaniu pijawki Erpobdella octoculata (L.) w Japonii.
by LK Pawłowski
Zeszyty Naukowe Uniwersytetu Łódzkiego Nauki Matematiczno-przyrodnicze Seria II 12 pages 127--136 (1962)
Tracer. 1.5: http://tree.bio.ed.ac.uk/software/tracer/
by A Rambaut;AJ Drummond
A new species of terricolous leeches in Japan (Gastrostomobdellidae, Orobdella).
by LR Richardson
Bulletin of the National Science Museum Series A (Zoology) 1 pages 39--56 (1975)
- 110004312000
MrBayes 3: Bayesian phylogenetic inference under mixed models.
by F Ronquist;JP Huelsenbeck
Bioinformatics 19 pages 1572--1574 (2003)
- 10.1093/bioinformatics/btg180
Leech Biology and Behaviour.
by RT Sawyer
Estimating the dimension of a model.
by G Schwarz
The Annals of Statistics 6 pages 461--464 (1978)
- 10.1214/aos/1176344136
A fast structural multiple alignment method for long RNA sequences. BMC Bioinformatics 9: 33.
by Y Tabei;H Kiryu;T Kin;K Asai
- 10.1186/1471-2105-9-33
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.
by K Tamura;D Peterson;N Peterson;G Stecher;M Nei;S Kumar
Molecular Biology and Evolution 28 pages 2731--2739 (2011)
- 10.1093/molbev/msr121
Phylogears. 2.0: http://www.fifthdimension.jp/
by AS Tanabe
Kakusan4 and Aminosan: two programs for comparing nonpartitioned, proportional and separate models for combined molecular phylogenetic analyses of multilocus sequence data.
by AS Tanabe
Molecular Ecology Resources 11 pages 914--921 (2011)
- 10.1111/j.1755-0998.2011.03021.x

Only known citations between publications in BioNames are listed here.

A new species of Orobdella (Hirundinida, Arhynchobdellida, Orobdellidae) from Taipei, Taiwan
by Takafumi Nakano
ZooKeys 207 pages 49--63 (2012)
- 10.3897/zookeys.207.3334
- PMC3409684
- 22855640
- d10c419d-4fb1-406d-b805-2b65a193e1c3
A new sexannulate species of Orobdella (Hirudinida, Arhynchobdellida, Orobdellidae) from Yakushima Island, Japan
by Takafumi Nakano
ZooKeys 181 pages 79--93 (2012)
- 10.3897/zookeys.181.2932
- PMC3332023
- 22539913
- 5834b1de-0092-491f-b9eb-4b8e80e65fa5

[1] A new look at the statistical model identification.
by H Akaike
IEEE Transactions on Automatic Control 19 pages 716--723 (1974)
10.1109/TAC.1974.1100705

[2] 10.1109/TAC.1974.1100705

[3] Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference.
by G Altekar;S Dwarkadas;JP Huelsenbeck;F Ronquist
Bioinformatics 20 pages 407--415 (2004)
10.1093/bioinformatics/btg427

[4] 10.1093/bioinformatics/btg427

[5] Hirudinées du Musée de Leyde.
by R Blanchard
Notes from the Leyden Museum 19 pages 73--113 (1897)
111627

[6] 111627

[7] Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis.
by J Castresana
Molecular Biology and Evolution 17 pages 540--552 (2000)

[8] The unholy trinitiy: taxonomy, species delimitation and DNA barcoding.
by R DeSalle;MG Egan;ME Siddall
Philosophical Transactions of the Royal Society of London B Biological Sciences 360 pages 1905--1916 (2005)
10.1098/rstb.2005.1722

[9] 10.1098/rstb.2005.1722

[10] Confidence limits on phylogenies: an approach using the bootstrap.
by J Felsenstein
Evolution 39 pages 783--791 (1985)
10.2307/2408678

[11] 10.2307/2408678

[12] DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates.
by O Folmer;M Black;W Hoeh;R Lutz;R Vrijenhoek
Molecular Marine Biology and Biotechnology 3 pages 294--299 (1994)

[13] The first terrestrial leech in fauna of the USSR, Orobdella whitmani Oka (Hirudinea, Herpobdellidae), a Tertiary relict of forests of the southern Maritime Region.
by MS Gilyarov;EI Lukin;TS Perel
Doklady Akademii Nauk SSSR 188 pages 235--237 (1969)

[14] An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis.
by DM Hillis;JJ Bull
Systematic Biology 42 pages 182--192 (1993)

[15] Secondary structure prediction for aligned RNA sequences.
by IL Hofacker;M Fekete;PF Stadler
Journal of Molecular Biology 319 pages 1059--1066 (2002)
10.1016/S0022-2836(02)00308-X

[16] 10.1016/S0022-2836(02)00308-X

[17] Bayesian inference of phylogeny and its impact on evolutionary biology.
by JP Huelsenbeck;F Ronquist;R Nielsen;JP Bollback
Science 294 pages 2310--2314 (2001)
10.1126/science.1065889

[18] 10.1126/science.1065889

[19] TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics. BMC Evolutionary Biology 4: 18.
by G Jobb;A von Haeseler;K Strimmer
10.1186/1471-2148-4-18

[20] 10.1186/1471-2148-4-18

[21] Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework. BMC Bioinformatics 9: 212.
by K Katoh;H Toh
10.1186/1471-2105-9-212

[22] 10.1186/1471-2105-9-212

[23] A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences.
by M Kimura
Journal of Molecular Evolution 16 pages 111--120 (1980)
10.1007/BF01731581

[24] 10.1007/BF01731581

[25] Molecular systematics of the eastern fence lizard (Sceloporus undulatus): a comparison of parsimony, likelihood, and Bayesian approaches.
by AD Leaché;TW Reeder
Systematic Biology 51 pages 44--68 (2002)
10.1080/106351502753475871

[26] 10.1080/106351502753475871

[27] The equilibrium partition function and base pair binding probabilities for RNA secondary structure.
by JS McCaskill
Biopolymers 29 pages 1105--1119 (1990)
10.1002/bip.360290621

[28] 10.1002/bip.360290621

[29] The segmentation (metamerism and annulation) of the Hirudinea.
by JP Moore

[30] Leeches from Borneo with descriptions of new species.
by JP Moore
Proceedings of the Academy of Natural Sciences of Philadelphia 81 pages 267--295 (1929)
4064069

[31] 4064069

[32] A new species of the genus Orobdella (Hirudinida: Arhynchobdellida: Gastrostomobdellidae) from Kumamoto, Japan, and a redescription of O. whitmani with the designation of the lectotype.
by T Nakano
Zoological Science 27 pages 880--887 (2010)
10.2108/zsj.27.880
21039128

[33] 10.2108/zsj.27.880

[34] 21039128

[35] A new species of Orobdella (Hirudinida: Arhynchobdellida: Gastrostomobdellidae) from Tsushima Island, Japan.
by T Nakano
Species Diversity 16 pages 39--47 (2011a)

[36] Redescription of Orobdella ijimai (Hirudinida: Arhynchobdellida: Gastrostomobdellidae), and two new species of Orobdella from the Ryukyu Archipelago, Japan.
by T Nakano
Zootaxa 2998 pages 1--15 (2011b)

[37] Phylogenetic position of gastrostomobdellid leeches (Hirudinida, Arhynchobdellida, Erpobdelliformes) and a new family for the genus Orobdella. Zoologica Scripta.
by T Nakano;Z Ramlah;T Hikida
10.1111/j.1463-6409.2011.00506.x

[38] 10.1111/j.1463-6409.2011.00506.x

[39] Parapatric distribution of the lizards Plestiodon (formerly Eumeces) latiscutatus and P.
by T Okamoto;J Motokawa;M Toda;T Hikida
japonicus (Reptilia: Scinidae) around the Izu Peninsula, central Japan, and its biogeographic implications Zoological Science 23 pages 419--425 (2006)
10.2108/zsj.23.419

[40] 10.2108/zsj.23.419

[41] O występowaniu pijawki Erpobdella octoculata (L.) w Japonii.
by LK Pawłowski
Zeszyty Naukowe Uniwersytetu Łódzkiego Nauki Matematiczno-przyrodnicze Seria II 12 pages 127--136 (1962)

[42] Tracer. 1.5: http://tree.bio.ed.ac.uk/software/tracer/
by A Rambaut;AJ Drummond

[43] A new species of terricolous leeches in Japan (Gastrostomobdellidae, Orobdella).
by LR Richardson
Bulletin of the National Science Museum Series A (Zoology) 1 pages 39--56 (1975)
110004312000

[44] 110004312000

[45] MrBayes 3: Bayesian phylogenetic inference under mixed models.
by F Ronquist;JP Huelsenbeck
Bioinformatics 19 pages 1572--1574 (2003)
10.1093/bioinformatics/btg180

[46] 10.1093/bioinformatics/btg180

[47] Leech Biology and Behaviour.
by RT Sawyer

[48] Estimating the dimension of a model.
by G Schwarz
The Annals of Statistics 6 pages 461--464 (1978)
10.1214/aos/1176344136

[49] 10.1214/aos/1176344136

[50] A fast structural multiple alignment method for long RNA sequences. BMC Bioinformatics 9: 33.
by Y Tabei;H Kiryu;T Kin;K Asai
10.1186/1471-2105-9-33

[51] 10.1186/1471-2105-9-33

[52] MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.
by K Tamura;D Peterson;N Peterson;G Stecher;M Nei;S Kumar
Molecular Biology and Evolution 28 pages 2731--2739 (2011)
10.1093/molbev/msr121

[53] 10.1093/molbev/msr121

[54] Phylogears. 2.0: http://www.fifthdimension.jp/
by AS Tanabe

[55] Kakusan4 and Aminosan: two programs for comparing nonpartitioned, proportional and separate models for combined molecular phylogenetic analyses of multilocus sequence data.
by AS Tanabe
Molecular Ecology Resources 11 pages 914--921 (2011)
10.1111/j.1755-0998.2011.03021.x

[56] 10.1111/j.1755-0998.2011.03021.x

A new look at the statistical model identification.

Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference.

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis.

The unholy trinitiy: taxonomy, species delimitation and DNA barcoding.

Confidence limits on phylogenies: an approach using the bootstrap.

DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates.

The first terrestrial leech in fauna of the USSR, Orobdella whitmani Oka (Hirudinea, Herpobdellidae), a Tertiary relict of forests of the southern Maritime Region.

An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis.

Secondary structure prediction for aligned RNA sequences.

Bayesian inference of phylogeny and its impact on evolutionary biology.

TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics. BMC Evolutionary Biology 4: 18.

Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework. BMC Bioinformatics 9: 212.

A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences.

Molecular systematics of the eastern fence lizard (Sceloporus undulatus): a comparison of parsimony, likelihood, and Bayesian approaches.

The equilibrium partition function and base pair binding probabilities for RNA secondary structure.

The segmentation (metamerism and annulation) of the Hirudinea.

Parapatric distribution of the lizards Plestiodon (formerly Eumeces) latiscutatus and P.

Tracer. 1.5: http://tree.bio.ed.ac.uk/software/tracer/

MrBayes 3: Bayesian phylogenetic inference under mixed models.

Leech Biology and Behaviour.

Estimating the dimension of a model.

A fast structural multiple alignment method for long RNA sequences. BMC Bioinformatics 9: 33.

MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

Phylogears. 2.0: http://www.fifthdimension.jp/

Kakusan4 and Aminosan: two programs for comparing nonpartitioned, proportional and separate models for combined molecular phylogenetic analyses of multilocus sequence data.

A new species of Orobdella (Hirudinida, Arhynchobdellida, Gastrostomobdellidae) and redescription of O. kawakatsuorum from Hokkaido, Japan with the phylogenetic position of the new species

Authors