A new sexannulate species of Orobdella (Hirudinida, Arhynchobdellida, Orobdellidae) from Yakushima Island, Japan

doi:10.3897/zookeys.181.2932

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Title	A new sexannulate species of Orobdella (Hirudinida, Arhynchobdellida, Orobdellidae) from Yakushima Island, Japan
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Author(s)	Takafumi Nakano
Journal	ZooKeys
ISSN	1313-2989
Volume	181
Pages	79--93
DOI	10.3897/zookeys.181.2932
PMC	PMC3332023
PMID	22539913
ZooBank	5834b1de-0092-491f-b9eb-4b8e80e65fa5
PDF	http://www.pensoft.net/inc/journals/download.php?fileTable=J_GALLEYS&fileId=4265
SHA1	f29b2fd8f44da55268ee12654ae3a8a19757bc48
Year	2012
Citation

...

A new look at the statistical model identification.
by H Akaike
IEEE Transactions on Automatic Control 19 pages 716--723 (1974)
- 10.1109/TAC.1974.1100705
Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference.
by G Altekar;S Dwarkadas;JP Huelsenbeck;F Ronquist
Bioinformatics 20 pages 407--415 (2004)
- 10.1093/bioinformatics/btg427
Higher level relationships of leeches (Annelida: Clitellata: Euhirudinea) based on morphology and gene sequences.
by K Apakupakul;ME Siddall;EM Burreson
Molecular Phylogenetics and Evolution 12 pages 350--359 (1999)
- 10.1006/mpev.1999.0639
Hirudinées du Musée de Leyde.
by R Blanchard
Notes from the Leyden Museum 19 pages 73--113 (1897)
- 111627
Insights into the evolutionary history of Indo-Pacific bloodfeeding terrestrial leeches (Hirudinida :Arhynchobdellida : Haemadipisdae).
by E Borda;ME Siddall
Invertebrate Systematics 24 pages 456--472 (2011)
- 10.1071/IS10013
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis.
by J Castresana
Molecular Biology and Evolution 17 pages 540--552 (2000)
Histone H3 and U2 snRNA DNA sequences and arthropod molecular evolution.
by DJ Colgan;A McLauchlan;GDF Wilson;SP Livingston;GD Edgecombe;J Macaranas;G Cassis;MR Gray
Australian Journal of Zoology 46 pages 419--437 (1998)
- 10.1071/ZO98048
Confidence limits on phylogenies: an approach using the bootstrap.
by J Felsenstein
Evolution 39 pages 783--791 (1985)
- 10.2307/2408678
DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates.
by O Folmer;M Black;W Hoeh;R Lutz;R Vrijenhoek
Molecular Marine Biology and Biotechnology 3 pages 294--299 (1994)
An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis.
by DM Hillis;JJ Bull
Systematic Biology 42 pages 182--192 (1993)
- 10.1093/sysbio/42.2.182
Secondary structure prediction for aligned RNA sequences.
by IL Hofacker;M Fekete;PF Stadler
Journal of Molecular Biology 319 pages 1059--1066 (2002)
- 10.1016/S0022-2836(02)00308-X
Bayesian inference of phylogeny and its impact on evolutionary biology.
by JP Huelsenbeck;F Ronquist;R Nielsen;JP Bollback
Science 294 pages 2310--2314 (2001)
- 10.1126/science.1065889
Class Hirudinea.
by T Itoh
TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics. BMC Evolutionary Biology 4: 18.
by G Jobb;A von Haeseler;K Strimmer
- 10.1186/1471-2148-4-18
Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework. BMC Bioinformatics 9: 212.
by K Katoh;H Toh
- 10.1186/1471-2105-9-212
Three species of land leeches from Taiwan, Haemadipsa rjukjuana comb. n., a new record for Haemadipsa picta Moore, and an updated description of Tritetrabdella taiwana (Oka).
by Y-T Lai;T Nakano;J-H Chen
ZooKeys 139 pages 1--22 (2011)
- 10.3897/zookeys.139.1711
Molecular systematics of the eastern fence lizard (Sceloporus undulatus): a comparison of parsimony, likelihood, and Bayesian approaches.
by AD Leaché;TW Reeder
Systematic Biology 51 pages 44--68 (2002)
- 10.1080/106351502753475871
The equilibrium partition function and base pair binding probabilities for RNA secondary structure.
by JS McCaskill
Biopolymers 29 pages 1105--1119 (1990)
- 10.1002/bip.360290621
The segmentation (metamerism and annulation) of the Hirudinea. In: Harding WA, Moore JP. The Fauna of British India, including Ceylon and Burma Hirudinea. Taylor and Francis, London, 1–12.
by JP Moore
Leeches from Borneo with descriptions of new species.
by JP Moore
Proceedings of the Academy of Natural Sciences of Philadelphia 81 pages 267--295 (1929)
- 4064069
A new species of the genus Orobdella (Hirudinida: Arhynchobdellida: Gastrostomobdellidae) from Kumamoto, Japan, and a redescription of O. whitmani with the designation of the lectotype.
by T Nakano
Zoological Science 27 pages 880--887 (2010)
- 10.2108/zsj.27.880
- 21039128
A new species of Orobdella (Hirudinida: Arhynchobdellida: Gastrostomobdellidae) from Tsushima Island, Japan.
by T Nakano
Species Diversity 16 pages 39--47 (2011a)
Redescription of Orobdella ijimai (Hirudinida: Arhynchobdellida: Gastrostomobdellidae), and two new species of Orobdella from the Ryukyu Archipelago, Japan.
by T Nakano
Zootaxa 2998 pages 1--15 (2011b)
A new species of Orobdella (Hirudinida, Arhynchobdellida, Gastrostomobdellidae) and redescription of O. kawakatsuorum from Hokkaido, Japan with the phylogenetic position of the new species.
by T Nakano
ZooKeys 169 pages 9--30 (2012)
- 10.3897/zookeys.169.2425
- 3278812
- 22371683
Phylogenetic position of gastrostomobdellid leeches (Hirudinida, Arhynchobdellida, Erpobdelliformes) and a new family for the genus Orobdella.
by T Nakano;Z Ramlah;T Hikida
Zoologica Scripta 41 pages 177--185 (2012)
- 10.1111/j.1463-6409.2011.00506.x
Phylogeny of macrophagous leeches (Hirudinea, Clitellata) based on molecular data and evaluation of the barcoding locus.
by A Oceguera-Figueroa;AJ Phillips;B Pacheco-Chaves;WK Reeves;ME Siddall
Zoologica Scripta 40 pages 194--203 (2011)
- 10.1111/j.1463-6409.2010.00465.x
On some new Japanese land leeches. (Orobdella nov. gen.).
by A Oka
The Journal of the College of Science, Imperial University, Japan 8 pages 275--306 (1895)
Key to Japanese leeches.
by A Oka
Dobutsugaku Zasshi 22 pages 56--64 (1910)
O występowaniu pijawki Erpobdella octoculata (L.) w Japonii.
by LK Pawłowski
Zeszyty Naukowe Uniwersytetu Łódzkiego Nauki Matematiczno-przyrodnicze Seria II 12 pages 127--136 (1962)
Tracer. 1.5: http://tree.bio.ed.ac.uk/software/tracer/
by A Rambaut;AJ Drummond
Gastrostomobdellidae f. nov. and a new genus for the gastroporous Orobdella octonaria Oka, 1895, of Japan (Hirudinoidea: Arhynchobdellae).
by LR Richardson
Bulletin of the National Science Museum (Tokyo) 14 pages 585--602 (1971)
A new species of terricolous leeches in Japan (Gastrostomobdellidae, Orobdella).
by LR Richardson
Bulletin of the National Science Museum Series A (Zoology) 1 pages 39--56 (1975)
- 110004312000
MrBayes 3: Bayesian phylogenetic inference under mixed models.
by F Ronquist;JP Huelsenbeck
Bioinformatics 19 pages 1572--1574 (2003)
- 10.1093/bioinformatics/btg180
Leech Biology and Behaviour.
by RT Sawyer
Estimating the dimension of a model.
by G Schwarz
The Annals of Statistics 6 pages 461--464 (1978)
- 10.1214/aos/1176344136
A fast structural multiple alignment method for long RNA sequences. BMC Bioinformatics 9: 33.
by Y Tabei;H Kiryu;T Kin;K Asai
- 10.1186/1471-2105-9-33
Phylogears. 2.0: http://www.fifthdimension.jp/
by AS Tanabe
Kakusan4 and Aminosan: two programs for comparing nonpartitioned, proportional and separate models for combined molecular phylogenetic analyses of multilocus sequence data.
by AS Tanabe
Molecular Ecology Resources 11 pages 914--921 (2011)
- 10.1111/j.1755-0998.2011.03021.x
Origin of the Ryukyu Biota.
by M Toda;S Shokita;M Nishida
The leeches of Japan.
by CO Whitman
Quarterly Journal of Microscopical Science New Series 26 pages 317--416 (1886)
- 112281

Only known citations between publications in BioNames are listed here.

A new species of Orobdella (Hirundinida, Arhynchobdellida, Orobdellidae) from Taipei, Taiwan
by Takafumi Nakano
ZooKeys 207 pages 49--63 (2012)
- 10.3897/zookeys.207.3334
- PMC3409684
- 22855640
- d10c419d-4fb1-406d-b805-2b65a193e1c3

[1] A new look at the statistical model identification.
by H Akaike
IEEE Transactions on Automatic Control 19 pages 716--723 (1974)
10.1109/TAC.1974.1100705

[2] 10.1109/TAC.1974.1100705

[3] Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference.
by G Altekar;S Dwarkadas;JP Huelsenbeck;F Ronquist
Bioinformatics 20 pages 407--415 (2004)
10.1093/bioinformatics/btg427

[4] 10.1093/bioinformatics/btg427

[5] Higher level relationships of leeches (Annelida: Clitellata: Euhirudinea) based on morphology and gene sequences.
by K Apakupakul;ME Siddall;EM Burreson
Molecular Phylogenetics and Evolution 12 pages 350--359 (1999)
10.1006/mpev.1999.0639

[6] 10.1006/mpev.1999.0639

[7] Hirudinées du Musée de Leyde.
by R Blanchard
Notes from the Leyden Museum 19 pages 73--113 (1897)
111627

[8] 111627

[9] Insights into the evolutionary history of Indo-Pacific bloodfeeding terrestrial leeches (Hirudinida :Arhynchobdellida : Haemadipisdae).
by E Borda;ME Siddall
Invertebrate Systematics 24 pages 456--472 (2011)
10.1071/IS10013

[10] 10.1071/IS10013

[11] Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis.
by J Castresana
Molecular Biology and Evolution 17 pages 540--552 (2000)

[12] Histone H3 and U2 snRNA DNA sequences and arthropod molecular evolution.
by DJ Colgan;A McLauchlan;GDF Wilson;SP Livingston;GD Edgecombe;J Macaranas;G Cassis;MR Gray
Australian Journal of Zoology 46 pages 419--437 (1998)
10.1071/ZO98048

[13] 10.1071/ZO98048

[14] Confidence limits on phylogenies: an approach using the bootstrap.
by J Felsenstein
Evolution 39 pages 783--791 (1985)
10.2307/2408678

[15] 10.2307/2408678

[16] DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates.
by O Folmer;M Black;W Hoeh;R Lutz;R Vrijenhoek
Molecular Marine Biology and Biotechnology 3 pages 294--299 (1994)

[17] An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis.
by DM Hillis;JJ Bull
Systematic Biology 42 pages 182--192 (1993)
10.1093/sysbio/42.2.182

[18] 10.1093/sysbio/42.2.182

[19] Secondary structure prediction for aligned RNA sequences.
by IL Hofacker;M Fekete;PF Stadler
Journal of Molecular Biology 319 pages 1059--1066 (2002)
10.1016/S0022-2836(02)00308-X

[20] 10.1016/S0022-2836(02)00308-X

[21] Bayesian inference of phylogeny and its impact on evolutionary biology.
by JP Huelsenbeck;F Ronquist;R Nielsen;JP Bollback
Science 294 pages 2310--2314 (2001)
10.1126/science.1065889

[22] 10.1126/science.1065889

[23] Class Hirudinea.
by T Itoh

[24] TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics. BMC Evolutionary Biology 4: 18.
by G Jobb;A von Haeseler;K Strimmer
10.1186/1471-2148-4-18

[25] 10.1186/1471-2148-4-18

[26] Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework. BMC Bioinformatics 9: 212.
by K Katoh;H Toh
10.1186/1471-2105-9-212

[27] 10.1186/1471-2105-9-212

[28] Three species of land leeches from Taiwan, Haemadipsa rjukjuana comb. n., a new record for Haemadipsa picta Moore, and an updated description of Tritetrabdella taiwana (Oka).
by Y-T Lai;T Nakano;J-H Chen
ZooKeys 139 pages 1--22 (2011)
10.3897/zookeys.139.1711

[29] 10.3897/zookeys.139.1711

[30] Molecular systematics of the eastern fence lizard (Sceloporus undulatus): a comparison of parsimony, likelihood, and Bayesian approaches.
by AD Leaché;TW Reeder
Systematic Biology 51 pages 44--68 (2002)
10.1080/106351502753475871

[31] 10.1080/106351502753475871

[32] The equilibrium partition function and base pair binding probabilities for RNA secondary structure.
by JS McCaskill
Biopolymers 29 pages 1105--1119 (1990)
10.1002/bip.360290621

[33] 10.1002/bip.360290621

[34] The segmentation (metamerism and annulation) of the Hirudinea. In: Harding WA, Moore JP. The Fauna of British India, including Ceylon and Burma Hirudinea. Taylor and Francis, London, 1–12.
by JP Moore

[35] Leeches from Borneo with descriptions of new species.
by JP Moore
Proceedings of the Academy of Natural Sciences of Philadelphia 81 pages 267--295 (1929)
4064069

[36] 4064069

[37] A new species of the genus Orobdella (Hirudinida: Arhynchobdellida: Gastrostomobdellidae) from Kumamoto, Japan, and a redescription of O. whitmani with the designation of the lectotype.
by T Nakano
Zoological Science 27 pages 880--887 (2010)
10.2108/zsj.27.880
21039128

[38] 10.2108/zsj.27.880

[39] 21039128

[40] A new species of Orobdella (Hirudinida: Arhynchobdellida: Gastrostomobdellidae) from Tsushima Island, Japan.
by T Nakano
Species Diversity 16 pages 39--47 (2011a)

[41] Redescription of Orobdella ijimai (Hirudinida: Arhynchobdellida: Gastrostomobdellidae), and two new species of Orobdella from the Ryukyu Archipelago, Japan.
by T Nakano
Zootaxa 2998 pages 1--15 (2011b)

[42] A new species of Orobdella (Hirudinida, Arhynchobdellida, Gastrostomobdellidae) and redescription of O. kawakatsuorum from Hokkaido, Japan with the phylogenetic position of the new species.
by T Nakano
ZooKeys 169 pages 9--30 (2012)
10.3897/zookeys.169.2425
3278812
22371683

[43] 10.3897/zookeys.169.2425

[44] 3278812

[45] 22371683

[46] Phylogenetic position of gastrostomobdellid leeches (Hirudinida, Arhynchobdellida, Erpobdelliformes) and a new family for the genus Orobdella.
by T Nakano;Z Ramlah;T Hikida
Zoologica Scripta 41 pages 177--185 (2012)
10.1111/j.1463-6409.2011.00506.x

[47] 10.1111/j.1463-6409.2011.00506.x

[48] Phylogeny of macrophagous leeches (Hirudinea, Clitellata) based on molecular data and evaluation of the barcoding locus.
by A Oceguera-Figueroa;AJ Phillips;B Pacheco-Chaves;WK Reeves;ME Siddall
Zoologica Scripta 40 pages 194--203 (2011)
10.1111/j.1463-6409.2010.00465.x

[49] 10.1111/j.1463-6409.2010.00465.x

[50] On some new Japanese land leeches. (Orobdella nov. gen.).
by A Oka
The Journal of the College of Science, Imperial University, Japan 8 pages 275--306 (1895)

[51] Key to Japanese leeches.
by A Oka
Dobutsugaku Zasshi 22 pages 56--64 (1910)

[52] O występowaniu pijawki Erpobdella octoculata (L.) w Japonii.
by LK Pawłowski
Zeszyty Naukowe Uniwersytetu Łódzkiego Nauki Matematiczno-przyrodnicze Seria II 12 pages 127--136 (1962)

[53] Tracer. 1.5: http://tree.bio.ed.ac.uk/software/tracer/
by A Rambaut;AJ Drummond

[54] Gastrostomobdellidae f. nov. and a new genus for the gastroporous Orobdella octonaria Oka, 1895, of Japan (Hirudinoidea: Arhynchobdellae).
by LR Richardson
Bulletin of the National Science Museum (Tokyo) 14 pages 585--602 (1971)

[55] A new species of terricolous leeches in Japan (Gastrostomobdellidae, Orobdella).
by LR Richardson
Bulletin of the National Science Museum Series A (Zoology) 1 pages 39--56 (1975)
110004312000

[56] 110004312000

[57] MrBayes 3: Bayesian phylogenetic inference under mixed models.
by F Ronquist;JP Huelsenbeck
Bioinformatics 19 pages 1572--1574 (2003)
10.1093/bioinformatics/btg180

[58] 10.1093/bioinformatics/btg180

[59] Leech Biology and Behaviour.
by RT Sawyer

[60] Estimating the dimension of a model.
by G Schwarz
The Annals of Statistics 6 pages 461--464 (1978)
10.1214/aos/1176344136

[61] 10.1214/aos/1176344136

[62] A fast structural multiple alignment method for long RNA sequences. BMC Bioinformatics 9: 33.
by Y Tabei;H Kiryu;T Kin;K Asai
10.1186/1471-2105-9-33

[63] 10.1186/1471-2105-9-33

[64] Phylogears. 2.0: http://www.fifthdimension.jp/
by AS Tanabe

[65] Kakusan4 and Aminosan: two programs for comparing nonpartitioned, proportional and separate models for combined molecular phylogenetic analyses of multilocus sequence data.
by AS Tanabe
Molecular Ecology Resources 11 pages 914--921 (2011)
10.1111/j.1755-0998.2011.03021.x

[66] 10.1111/j.1755-0998.2011.03021.x

[67] Origin of the Ryukyu Biota.
by M Toda;S Shokita;M Nishida

[68] The leeches of Japan.
by CO Whitman
Quarterly Journal of Microscopical Science New Series 26 pages 317--416 (1886)
112281

[69] 112281

A new look at the statistical model identification.

Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference.

Higher level relationships of leeches (Annelida: Clitellata: Euhirudinea) based on morphology and gene sequences.

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis.

Histone H3 and U2 snRNA DNA sequences and arthropod molecular evolution.

Confidence limits on phylogenies: an approach using the bootstrap.

DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates.

An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis.

Secondary structure prediction for aligned RNA sequences.

Bayesian inference of phylogeny and its impact on evolutionary biology.

Class Hirudinea.

TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics. BMC Evolutionary Biology 4: 18.

Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework. BMC Bioinformatics 9: 212.

Three species of land leeches from Taiwan, Haemadipsa rjukjuana comb. n., a new record for Haemadipsa picta Moore, and an updated description of Tritetrabdella taiwana (Oka).

Molecular systematics of the eastern fence lizard (Sceloporus undulatus): a comparison of parsimony, likelihood, and Bayesian approaches.

The equilibrium partition function and base pair binding probabilities for RNA secondary structure.

The segmentation (metamerism and annulation) of the Hirudinea. In: Harding WA, Moore JP. The Fauna of British India, including Ceylon and Burma Hirudinea. Taylor and Francis, London, 1–12.

Phylogeny of macrophagous leeches (Hirudinea, Clitellata) based on molecular data and evaluation of the barcoding locus.

Tracer. 1.5: http://tree.bio.ed.ac.uk/software/tracer/

MrBayes 3: Bayesian phylogenetic inference under mixed models.

Leech Biology and Behaviour.

Estimating the dimension of a model.

A fast structural multiple alignment method for long RNA sequences. BMC Bioinformatics 9: 33.

Phylogears. 2.0: http://www.fifthdimension.jp/

Kakusan4 and Aminosan: two programs for comparing nonpartitioned, proportional and separate models for combined molecular phylogenetic analyses of multilocus sequence data.

Origin of the Ryukyu Biota.

A new sexannulate species of Orobdella (Hirudinida, Arhynchobdellida, Orobdellidae) from Yakushima Island, Japan

Authors